PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_451290g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20795.7 Da PI: 8.2151 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 18 | 118 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C ++Cvlapyfp ++p+kfa vh++FGasn++++l+++ e+r+da+ss+vyeA+ar+rdPvyG++gv+ +lqqq+++l+++la MA_451290g0010 18 PCAACRTLRRRCGDKCVLAPYFPPNDPQKFATVHRVFGASNIIRILQDVGIEHRDDAVSSMVYEARARLRDPVYGCAGVVCQLQQQVCNLQSQLA 112 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ MA_451290g0010 113 TAQAQI 118 *99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.425 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.1E-42 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
FIRPAMREGK PRTKVATPCA ACRTLRRRCG DKCVLAPYFP PNDPQKFATV HRVFGASNII 60 RILQDVGIEH RDDAVSSMVY EARARLRDPV YGCAGVVCQL QQQVCNLQSQ LATAQAQILN 120 LHCQQGNLLE FLTASISSLG KGGQTAGHDH DEPLGSSWTD SPASQVTDGQ KDTDFLLQEM 180 FMWSRYGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-40 | 18 | 125 | 11 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-40 | 18 | 125 | 11 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104771 | 0.0 | BT104771.1 Picea glauca clone GQ02814_K04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611728.1 | 9e-59 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016497689.1 | 9e-59 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 6e-52 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2Z7BKX0 | 1e-57 | A0A2Z7BKX0_9LAMI; LOB domain-containing protein 11-like | ||||
STRING | XP_009611728.1 | 4e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-46 | LOB domain-containing protein 1 |