PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_45091g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 348aa MW: 39089.6 Da PI: 7.0242 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.3e-13 | 15 | 62 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +WT+ Ed +l ++++ +G + W+ a++ g++Rt+k+c++rw++yl MA_45091g0010 15 AAWTKTEDMILSQYIRVHGDRgGWTNLAKKAGLKRTGKSCRLRWLNYL 62 58*****************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++Edel+++++++lG++ W++Ia +++ gRt++++k++w+++l MA_45091g0010 68 RGNISADEDELIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTHL 113 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.753 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-12 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-8 | 16 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.843 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDGSPCCSKE GLNRAAWTKT EDMILSQYIR VHGDRGGWTN LAKKAGLKRT GKSCRLRWLN 60 YLRPDIKRGN ISADEDELII RLHRLLGNRW SLIAGRLPGR TGNEIKNYWN THLSKKLLSM 120 NDSQTNSSTQ YLKTRSKPPF TLQNHVFKTT AVRITTAVRH SATVRPNGSN GHGCSNLSSD 180 EAYKLCNAKE TPNSSKSWGD LPANNSITDN HSDRIAFGMA DVVKAEARNS TCTMSSLVDK 240 ESPHSDHSAE DTATLAESLL DMNGLSSPHW NLLFSPSDYS KDFGVEELYR GAAMEMNEFE 300 DIMCSYQSNM QRVNSLTVAD HEAMEGFYDN PQHVNWIHEL DYLHDLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-22 | 12 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LMJ6 | 1e-146 | B8LMJ6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-58 | myb domain protein 3 |