PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_44659g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family CPP
Protein Properties Length: 406aa    MW: 43726.9 Da    PI: 8.0628
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_44659g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.96.3e-16949141
            TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                   k++kgC+Ckks ClkkYCeCf+ +  Cse+CkC dCkN e+
  MA_44659g0010  9 KHNKGCHCKKSGCLKKYCECFQGNILCSENCKCIDCKNYEN 49
                   589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.383149IPR005172CRC domain
SMARTSM011148.2E-20950IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-121247IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MGEQLLPAKH NKGCHCKKSG CLKKYCECFQ GNILCSENCK CIDCKNYENS EERKALYQSD  60
VTGSLNYPQP VPNVPMSGTT GPVGYSSPSP SKKRKTQEVL FSQAPKEHAS RQTSQTLQGS  120
TLKNISSTMN ASNPPLSTVN GTGAFGISSS KVIYRSLLAD VVQTDTVKGL CELLVIASRE  180
AANACGAQTS LENGPLDKQA AKGNSLTNNK DSPESSTQNE FRSEQIRDDR LESDREYKVA  240
AGASSTNCAE EAEFDSGANS CKQRAMSPGT LALMCDEQDT LFTAPSSPSG GCRKPCSHHT  300
TRTFAEQERI ILSEFRDCLR SIIDVGKRRA TQYSTDAAMA MKRNQQPELN PHLSRPVPVS  360
KTVTVPSSVP LSASSAALMT EVNVSSSGSL RNGDKSDPVV TCRQQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-1495883132Protein lin-54 homolog
5fd3_B5e-1495883132Protein lin-54 homolog
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1037360.0BT103736.1 Picea glauca clone GQ02801_F13 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-70Tesmin/TSO1-like CXC domain-containing protein