PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_445236g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25881.1 Da PI: 6.3882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.8 | 5.1e-40 | 76 | 175 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck++r+kC+++Cvlapyfp+++p kf vhk+FG+ +v+k l++lp e+r da++s+vyeA r+rdPv+G++gvi++lq+++ +l+ +la MA_445236g0010 76 PCAGCKIQRKKCTENCVLAPYFPQSDPDKFLLVHKVFGNGHVIKSLQELPAEQRGDAVNSMVYEASQRIRDPVHGCAGVINDLQNKITELQLQLA 170 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MA_445236g0010 171 STQAE 175 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.200 | 4.9E-4 | 20 | 80 | IPR000209 | Peptidase S8/S53 domain |
PROSITE pattern | PS00138 | 0 | 27 | 37 | IPR023828 | Peptidase S8, subtilisin, Ser-active site |
PROSITE profile | PS50891 | 25.397 | 75 | 176 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-38 | 76 | 173 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MALRFPSLST TMAGNRFRRN FSEIMAGTSD AAPATAGTVN VLKGQHKLWN QDFQKTANTM 60 VKNMSDNASK PGSMSPCAGC KIQRKKCTEN CVLAPYFPQS DPDKFLLVHK VFGNGHVIKS 120 LQELPAEQRG DAVNSMVYEA SQRIRDPVHG CAGVINDLQN KITELQLQLA STQAELANIN 180 MQHANLFTLV TGSHEASDPN FYCVSPQGSE DTDAQSMVVD EEDHPLQFWE SFWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 69 | 176 | 4 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 69 | 176 | 4 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347331.1 | 5e-51 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 1e-49 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 4e-75 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | Gorai.012G094200.1 | 4e-50 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-52 | LOB domain-containing protein 1 |