PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_44185g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 317aa    MW: 34610.3 Da    PI: 5.3729
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_44185g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.5e-19193227135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    Cs+C t kTp+WR gp+g+ktLCnaCG+++++ +l
  MA_44185g0010 193 CSHCATQKTPQWRAGPEGPKTLCNACGVRFKSGRL 227
                    *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.1E-18187237IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-13189249No hitNo description
PROSITE profilePS5011411.741191223IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-15191225IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.05E-14192239No hitNo description
PfamPF003202.3E-17193227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDTSYGPSCL EGRKTWKMTE AEAGIIGGIS DFLLIDDLLD FSNEEIAAPI GEKCSDANGA  60
DSSTVTDTAK MAGTMLSCNN DSLLDNRRSS HISNAVSTDI KAHNSPGDLC VSCDDLAELE  120
WLSNFVEDSF STGNVPTEIT HHVHDSESSE QAGGAESLFT NTNKLSKTKT SHVTSKKKGA  180
VQVDHPGIQV RKCSHCATQK TPQWRAGPEG PKTLCNACGV RFKSGRLLPE YRPAASPTFV  240
GNQHSNSHRK VIEMRRQKLS EIDEKPDAHI EKLVQGLIQY NYSSEQHSDV GKSDDDECLL  300
HNNINTGEDL NFCRQIV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134990.0BT113499.1 Picea glauca clone GQ03411_C08 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022153555.11e-55GATA transcription factor 4-like
TrEMBLA0A061GAJ12e-51A0A061GAJ1_THECC; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-42GATA transcription factor 4