PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_44185g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 317aa MW: 34610.3 Da PI: 5.3729 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.9 | 1.5e-19 | 193 | 227 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C t kTp+WR gp+g+ktLCnaCG+++++ +l MA_44185g0010 193 CSHCATQKTPQWRAGPEGPKTLCNACGVRFKSGRL 227 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.1E-18 | 187 | 237 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.05E-13 | 189 | 249 | No hit | No description |
PROSITE profile | PS50114 | 11.741 | 191 | 223 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.7E-15 | 191 | 225 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.05E-14 | 192 | 239 | No hit | No description |
Pfam | PF00320 | 2.3E-17 | 193 | 227 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 193 | 218 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MDTSYGPSCL EGRKTWKMTE AEAGIIGGIS DFLLIDDLLD FSNEEIAAPI GEKCSDANGA 60 DSSTVTDTAK MAGTMLSCNN DSLLDNRRSS HISNAVSTDI KAHNSPGDLC VSCDDLAELE 120 WLSNFVEDSF STGNVPTEIT HHVHDSESSE QAGGAESLFT NTNKLSKTKT SHVTSKKKGA 180 VQVDHPGIQV RKCSHCATQK TPQWRAGPEG PKTLCNACGV RFKSGRLLPE YRPAASPTFV 240 GNQHSNSHRK VIEMRRQKLS EIDEKPDAHI EKLVQGLIQY NYSSEQHSDV GKSDDDECLL 300 HNNINTGEDL NFCRQIV |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT113499 | 0.0 | BT113499.1 Picea glauca clone GQ03411_C08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022153555.1 | 1e-55 | GATA transcription factor 4-like | ||||
TrEMBL | A0A061GAJ1 | 2e-51 | A0A061GAJ1_THECC; GATA transcription factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-42 | GATA transcription factor 4 |