PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_439607g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 209aa MW: 23564.9 Da PI: 8.4661 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.6e-13 | 14 | 56 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ErrRR+++N+ + +Lr l+P+ + K++Ka+iL A+eY+++L MA_439607g0010 14 VSERRRRQKMNKLLYTLRALVPNiS------KMDKASILGDAIEYVNEL 56 57*********************66......***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.80E-13 | 5 | 61 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-18 | 6 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.571 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 13 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 13 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-10 | 14 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MLRYKKPKLS KNVVSERRRR QKMNKLLYTL RALVPNISKM DKASILGDAI EYVNELKQQV 60 ERAECDVQST NVSSQSAEAP VDETNSLGLR LDAANRYGSD RKYHVQVETR VLGESIAELR 120 IRCKKECGIL FHLTRALESL PFQLKNVSFT TLDDYLLLLN VVLQAEAESE CFPATGDCGV 180 RQSIEDSFGK QGLILTSGNS NGHSWQELK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-16 | 12 | 66 | 9 | 63 | Transcription factor MYC2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109427 | 0.0 | BT109427.1 Picea glauca clone GQ03208_E14 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 7e-23 | bHLH family protein |