PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_43386g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-X1
Protein Properties Length: 1310aa    MW: 144803 Da    PI: 8.3417
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_43386g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.78e-06779797119
       zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                    CGkH Cq lCH G CppC 
  MA_43386g0010 779 CGKHFCQDLCHSGHCPPCL 797
                    ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.53E-6455524No hitNo description
PROSITE profilePS500168.76462523IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590465520IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.347465521IPR001841Zinc finger, RING-type
CDDcd060084.99E-5690714No hitNo description
PfamPF01422110690695IPR000967Zinc finger, NF-X1-type
SMARTSM00438270739775IPR000967Zinc finger, NF-X1-type
PfamPF0142222739750IPR000967Zinc finger, NF-X1-type
CDDcd060085.86E-13769821No hitNo description
SMARTSM004381.1E-4779798IPR000967Zinc finger, NF-X1-type
PfamPF014226.2E-5779796IPR000967Zinc finger, NF-X1-type
CDDcd060084.52E-6826874No hitNo description
SMARTSM004380.45836854IPR000967Zinc finger, NF-X1-type
PfamPF0142229844853IPR000967Zinc finger, NF-X1-type
SMARTSM004380.12889921IPR000967Zinc finger, NF-X1-type
PfamPF014220.044889904IPR000967Zinc finger, NF-X1-type
SMARTSM004380.049930951IPR000967Zinc finger, NF-X1-type
PROSITE profilePS510619.25510231088IPR001374R3H domain
CDDcd023250.0027210391084No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1310 aa     Download sequence    Send to blast
MGGNGRGEWV PRGRGIGNPE PNPTPNPISN TNPNSNPKPT FVPKRNSHQN TRNPNRNFNA  60
NPNPSPTQVS WEERNGDQGH YQYRQVGSGS GIDGLTQSLQ LSNNQANVSV NSARSQGTDI  120
ESAGDNDVYL NMNSSPSQDF RVERNGGHRY QYRPVSSSSN VSRLLQSSKL PDCQSNVSES  180
PGSSERSNLH QTDDNSEENG PSFPQNQQRR PARGRGRGGH FDRNNNKNYY RRIGISNPRH  240
NTASQGIHGQ ENDERIGDYV SDGQNEASIL GNNFTNEDLI GPSIDGNQLT QPMGQQRREL  300
KGFGNTKMMN SSQDWRCNLP PPQSYTPNQG ILGQENAERI GDCDNDGRNK AYAERIGDCD  360
NDGRNKAYIL GQNCTNEDHM TPFIHGNQLT QSTGQQRREM KGFRNRKMMG SSQDWRCNLL  420
PPPPQNYESI SAKQESREKT TLDRSSVPKL VQEIDEKLNK EKVECMICYE IVRRSAPIWS  480
CGNCYAIFHL HCVRKWARAP SSVDLSAGQS QGSNWRCPGC QSVQLSFRVP TGDAPVVSLC  540
SFHSQMIFVT TAFVGRCKSR KWNFISLHIH VEDHVGSHLK RKRKHPVAHI HALSNVIQVP  600
AHLAQQWLHP NLVHVGKQQL QGDVPIINQL NHVDSAVRSL SDVDAIIVIK SAMKAYVVLA  660
RIISAARYVI LENVENVNYR LGRSNLAPVG ECPPCLVSVN KKCRCGSSSQ TVPCWKTMVS  720
VEENDEFTCE KSCGQKKNCG RHRCSERCCP LANRGGSITL SGDWDPHLCQ MSCGKKLQCG  780
KHFCQDLCHS GHCPPCLETI FSDLSCACGK TSIPPPVPCG TPIPPCLFPC SIPQPCGHLA  840
SHDCHFGECP PCTVPVAKEC VGSHVVLKNV PCGSRDIRCN KLCGNTRQCG MHACTRTCHL  900
PPCDSVSMEN SSSVARISCG QLCGSPRRDC RHTCTASCHP SIPCPDTRCE LLVTITCSCG  960
RLTAKVPCDA GGLRPDPVLE ASILHKLPAP LQPVQSNSNR VPLGQRKLAC DDECWTIPRF  1020
VAPSCSERFR YLVLGKTKAS SNSIRVHVFG PMPKDKRDML RHLAERWSLF IYSAGRDPKR  1080
FLIIQATQKS RAPVRSIMPK GSLPTIGLVQ PPPFNSVVDM DPRLVLALFD LPREAEVSSL  1140
ILRFGGECEL VWLNDKNALA IFTDPARAAT ALRRVDHASV YRGAIVVPHN GGLPNRNAWA  1200
TKDGTAEKAN AWKKNEQQTV WMEDSWGEDW SSAEVSKPVW QFKKNPIATT RNPYGALEKD  1260
NAGEACSSTS DVQPSSKPLT TMGSIEVSSS QENQNKYSPS EVDDWEKVFD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1053030.0BT105303.1 Picea glauca clone GQ02820_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828449.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_019081933.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1