PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_426919g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 173aa    MW: 19462.7 Da    PI: 5.0805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_426919g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-172372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kG+r +k +g+Wv+eIr p+    +  r++lg+++t+e+Aa+a++ a+ +l+g
  MA_426919g0010 23 QFKGIRKRK-WGKWVSEIRMPN----StGRIWLGSYDTPEKAARAYDFAAYCLRG 72
                    69****999.**********93....259************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-292281IPR001471AP2/ERF domain
PROSITE profilePS5103222.1282380IPR001471AP2/ERF domain
SMARTSM003801.5E-322386IPR001471AP2/ERF domain
CDDcd000181.98E-282382No hitNo description
SuperFamilySSF541711.18E-202382IPR016177DNA-binding domain
PfamPF008476.2E-112472IPR001471AP2/ERF domain
PRINTSPR003679.6E-122435IPR001471AP2/ERF domain
PRINTSPR003679.6E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MTKPLTNHNG HSRPENRSLK SRQFKGIRKR KWGKWVSEIR MPNSTGRIWL GSYDTPEKAA  60
RAYDFAAYCL RGSKAKLNFP LSPSEIPSAS SLSPPQIQAV AAKFAAEEFQ LPYEDDAAFS  120
YSGTEEECGN EGQENDPAFW DSVLLECLET GKSPNLNEFP PLDESLEYYG VYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-172081264ATERF1
3gcc_A3e-172081264ATERF1
5wx9_A1e-1623801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0835911e-147EF083591.1 Picea sitchensis clone WS02729_D14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026430011.17e-40ethylene-responsive transcription factor ERF017-like
SwissprotQ9C5912e-36ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA9NQM15e-88A9NQM1_PICSI; Uncharacterized protein
STRINGevm.model.supercontig_266.52e-37(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-31ERF family protein