PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_42369g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 212aa    MW: 23106.7 Da    PI: 8.4855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_42369g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19131183156
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    s+y+GVr+++ +g++ AeIrdp +  k +r++lg+f taeeAa a+++a+ +++g+
  MA_42369g0010 131 SHYRGVRRRP-WGKFSAEIRDPAK--KGARVWLGTFNTAEEAALAYDRAAFRIRGA 183
                    79********.**********954..34*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-30131190No hitNo description
SuperFamilySSF541712.03E-23131191IPR016177DNA-binding domain
PfamPF008474.0E-14131182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31132190IPR001471AP2/ERF domain
PROSITE profilePS5103224.408132190IPR001471AP2/ERF domain
SMARTSM003803.5E-35132196IPR001471AP2/ERF domain
PRINTSPR003674.1E-11133144IPR001471AP2/ERF domain
PRINTSPR003674.1E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDVAGGVSNN KNMKMLNMLE LIRHHLLDVE DEIDIVDLQG GNQVLASGSR LTSDGNKFAE  60
AQGGNQESSS SSSTVLACGS RLTSDDDEFA VAQDYSSSPV STVIRREEAL KVKQQAHDEE  120
NGEIKQISRA SHYRGVRRRP WGKFSAEIRD PAKKGARVWL GTFNTAEEAA LAYDRAAFRI  180
RGARALVNFP LAFASISENG SAAGHTGQKR KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-33128191164ATERF1
3gcc_A2e-33128191164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and Alternaria brassicicola (locally and systemically). Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2) while wounding induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0824031e-152EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO803381e-32EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA9NMA31e-102A9NMA3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-26ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]