PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_41803g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 270aa    MW: 29838.1 Da    PI: 9.92
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_41803g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-14105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
    MA_41803g0010 105 PWTEEEHRLFLMGLNKYGKGDWRSISRNFVVSRTPTQVASHAQKY 149
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.064146IPR017877Myb-like domain
SuperFamilySSF466892.73E-61852IPR009057Homeodomain-like
CDDcd001679.82E-42046No hitNo description
PROSITE profilePS5129419.598154IPR017930Myb domain
SuperFamilySSF466891.17E-1799154IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-18101152IPR006447Myb domain, plants
SMARTSM007171.2E-12102152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-12102148IPR009057Homeodomain-like
PfamPF002492.3E-12105149IPR001005SANT/Myb domain
CDDcd001673.63E-11105150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHWRSSTKTR RIDXXDKDTP DRWENVATCV PGKTPAEVRR HYELLVEDVN VIEAGRVALP  60
DYSENSYTPP EWMSDQSGDL TKQQAVSVKA PSAKASEQER KKGVPWTEEE HRLFLMGLNK  120
YGKGDWRSIS RNFVVSRTPT QVASHAQKYF LRLSSGNKEK KRSSIHDITS VNGAEMKQPH  180
LQQSSAITNS PNPAAVSRSS SMMYPSSLGG ATMVNSMGSP TGGNHMMLPP HSLGQYSQKG  240
IGGHSPGHII PVSSLGMPQM GYPMQPTMHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1610622173RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ2642512e-90JQ264251.1 Pinus lambertiana isolate 11379 anonymous locus CL4417Contig1_03 genomic sequence.
GenBankJQ4430422e-90JQ443042.1 Pinus cembra isolate AcesapD05 hypothetical protein (CL4417Contig1_03) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366442.12e-72transcription factor SRM1-like
RefseqXP_024366443.12e-72transcription factor SRM1-like
TrEMBLA0A0D6R2Q11e-123A0A0D6R2Q1_ARACU; Uncharacterized protein
STRINGPP1S256_11V6.19e-72(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.16e-59MYB family protein