PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4130g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 425aa    MW: 48008.9 Da    PI: 7.6664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4130g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06264283120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++Cp CgksF+r  n++ H+
  MA_4130g0010 264 FSCPVCGKSFNRYNNMQMHM 283
                   89*****************9 PP
2zf-C2H212.60.0004348370123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C  Cgk F  + + ++H +++
  MA_4130g0010 348 FMCRRCGKAFAVRGDWRTHEKNC 370
                   89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-6258286No hitNo description
PROSITE profilePS5015711.053264291IPR007087Zinc finger, C2H2
SMARTSM003550.019264286IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.6E-7264283IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
SMARTSM00355200311343IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.31E-6330368No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5335368IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582348368IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.725348368IPR007087Zinc finger, C2H2
SMARTSM00355120374397IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSGVRYMATY GETEHHGLRG GLENPNAEHR VWSMLPDAAF PYTMLAILKA QDQSIICLAF  60
YSDKARINTR SYNPRSGSNL SAIPTQYPIS FTEWLKASVP SGTVPDSYQN TFPRTTRNPP  120
CPDSASANPN YPMTETCINP SSSSSLMLSV NLDQYPFSRY KLPERCDSPP LREALPLLSL  180
SPPRPSEMAP LHAGGREFET DEDVTVALQI GLPNNDTSYS KPFNADSVDT ADMENLQQGS  240
RRILSDGQYW IPTPSQILIG PTQFSCPVCG KSFNRYNNMQ MHMWGHGSQY RRGPESLRGT  300
QPTAMLRLPC YCCAEGCRNN IDHPRAKPLK DFRTLQTHYK RKHGTKPFMC RRCGKAFAVR  360
GDWRTHEKNC GKLWFCICGS DFKHKRSLKD HIRAFGHGHA PHHEDLHNFE DEDPASEIEQ  420
DDETQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246927.11e-132PREDICTED: zinc finger protein WIP2-like
SwissprotQ8W0311e-115ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A1U7Z1K61e-131A0A1U7Z1K6_NELNU; zinc finger protein WIP2-like
STRINGXP_010246927.11e-131(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]