PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_4076g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | bHLH | ||||||||
Protein Properties | Length: 590aa MW: 65474.7 Da PI: 7.6583 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.9 | 1.8e-13 | 427 | 473 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq MA_4076g0010 427 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIQELQ 473 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.1E-54 | 51 | 237 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.58 | 423 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-19 | 426 | 492 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.09E-15 | 426 | 477 | No hit | No description |
Pfam | PF00010 | 6.2E-11 | 427 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-19 | 427 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-18 | 429 | 478 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MGSEAAAASR FWNEEDKATV NSLLGPSAFE HLMMSYLSSE GLVSGINDCA LQQKLQNLVE 60 SSSFNWTYAI FWQLSRSKNG DVVLGWGDGS FKGPREGQEA DQARGFDQRF AETDQQLKKK 120 VLQKLQSFFG GGGEEDNNFV SGLDNVSDTE MFYLASMYYS FPRGIGVPGQ ALASGKNIWL 180 NEPSKLPTNM CSRACLAKTG GIQTLVCLPM EHGVVEVGSV EMIRESKHAI DKIRSSFNEN 240 ACDGNRGQPT VKGSLVAPFS PNPIRVNAVN AKVAPPLKPS HDWKIFGQEL SKSSESVVTK 300 VEERDRHYHP VFRPPYSHAA PYVTNEQRIS YTNANQNGLQ SPNWSHISNG EGGEIYNTRD 360 LIKQSSRISP ISVAGPSLSA VTARPPLMES EEHSDVEASE RRPVVVEERR PRKRGRKPAN 420 GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAISYIQ ELQNKVKDME 480 TEKEKQQQPQ LQQAKSNIQD GRIVDPISDI DVQMMSGEAT VRVSCPKESH PVGRVMLALQ 540 RLQLDVHHAN ISAANENILH TFVIKLGGAQ ALTKDQLLEA ISGWSPRQKQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-35 | 46 | 240 | 4 | 195 | Transcription factor MYC3 |
4rqw_B | 1e-35 | 46 | 240 | 4 | 195 | Transcription factor MYC3 |
4rs9_A | 1e-35 | 46 | 240 | 4 | 195 | Transcription factor MYC3 |
4yz6_A | 1e-35 | 46 | 240 | 4 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 400 | 417 | RRPVVVEERRPRKRGRKP |
2 | 408 | 416 | RRPRKRGRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00100 | PBM | Transfer from AT1G01260 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676537 | 0.0 | EF676537.1 Picea sitchensis clone WS02741_B23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLA6 | 0.0 | B8LLA6_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2531 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-106 | bHLH family protein |