PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_40338g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27619.8 Da PI: 8.8568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.8e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+Wv+eIr p + kr++lg++ tae Aa+a++aa ++l+g MA_40338g0010 45 QYRGVRMRS-WGSWVSEIRAP-----HqkKRIWLGSYSTAEAAARAYDAAVLCLKG 94 69****998.**********7.....335************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-34 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-20 | 45 | 104 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.67E-19 | 45 | 104 | No hit | No description |
PRINTS | PR00367 | 3.1E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-10 | 46 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVCRRKDSEC HRNVLIGSQQ HSECRECQVL SKASKKSSRG SSSGQYRGVR MRSWGSWVSE 60 IRAPHQKKRI WLGSYSTAEA AARAYDAAVL CLKGSSATLN FPESATIIHP PQSCKPPLMS 120 PRSIQKVAAA AAYGSPGPAT DFAGSNGGDC AAQSLQVSLD SNLKTEVAPQ TMANSANSNS 180 DVGVTEEISW LERFLESPSR VHHTYDQMLS CALLSSXXVH CYRLIWLRTP TGSMRVMVSI 240 IMRISAACGA SPDDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 40 | 107 | 9 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ118849 | 9e-80 | FJ118849.1 Pinus taeda isolate 5484 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118850 | 9e-80 | FJ118850.1 Pinus taeda isolate 5492 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118851 | 9e-80 | FJ118851.1 Pinus taeda isolate 5488 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118852 | 9e-80 | FJ118852.1 Pinus taeda isolate 5490 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118853 | 9e-80 | FJ118853.1 Pinus taeda isolate 5477 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118854 | 9e-80 | FJ118854.1 Pinus taeda isolate 5485 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118855 | 9e-80 | FJ118855.1 Pinus taeda isolate 5493 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118856 | 9e-80 | FJ118856.1 Pinus taeda isolate 5478 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118857 | 9e-80 | FJ118857.1 Pinus taeda isolate 5483 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118860 | 9e-80 | FJ118860.1 Pinus taeda isolate 5481 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118861 | 9e-80 | FJ118861.1 Pinus taeda isolate 5482 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118862 | 9e-80 | FJ118862.1 Pinus taeda isolate 5487 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118863 | 9e-80 | FJ118863.1 Pinus taeda isolate 5489 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | FJ118865 | 9e-80 | FJ118865.1 Pinus taeda isolate 5479 anonymous locus UMN_971_01 genomic sequence. | |||
GenBank | JQ264408 | 9e-80 | JQ264408.1 Pinus radiata isolate 5494 hypothetical protein (UMN_971_01) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B2CSN5 | 2e-31 | B2CSN5_TAXCU; Transcription factor AP2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 6e-22 | ERF family protein |