PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_4032g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 229aa    MW: 24758 Da    PI: 9.8832
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_4032g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-201766255
           AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +++GVr ++ +gr++AeIrd ++    + r +lg+f+taeeAa+a++ a+ +l+g
  MA_4032g0010 17 HFRGVRKRP-WGRYAAEIRDpWK----KVRLWLGTFDTAEEAARAYDTAAISLRG 66
                  69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-311774IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-221776IPR016177DNA-binding domain
PROSITE profilePS5103223.1961774IPR001471AP2/ERF domain
PfamPF008471.5E-121766IPR001471AP2/ERF domain
CDDcd000184.75E-271775No hitNo description
SMARTSM003808.7E-391780IPR001471AP2/ERF domain
PRINTSPR003671.2E-101829IPR001471AP2/ERF domain
PRINTSPR003671.2E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MAPSNNRRDD NGERGVHFRG VRKRPWGRYA AEIRDPWKKV RLWLGTFDTA EEAARAYDTA  60
AISLRGPKAK TNFAYSSPSS SSSLHNNQSS SQNSSTVESW PSAAPSSSQN SSTVESWPSA  120
APVTRSGDLE LHASFLPRIG VSTGRRGFNG GNPRSERRRS LSEKNGGRKA EGAEARTALS  180
DSDSSSSAIL DGDAQAPPPP PAAKRPFLLD LNLPPPLDDD DEQPQQIVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-211073271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1024620.0BT102462.1 Picea glauca clone GQ0193_P18 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ7H5K84e-88J7H5K8_9SPER; Transcription factor 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.17e-20ERF domain protein 12