PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_39832g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21692.6 Da PI: 5.0205 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.7 | 3.3e-37 | 13 | 111 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++Ck++++kC++ Cvlapyfp+++p+kf vh++FG+ +v+kll+ lp e+r da+ss+vyeA r+rdPv+G++gvi++lq++l++l+ ++++ MA_39832g0010 13 SCSGCKIQKKKCSDYCVLAPYFPQNDPQKFLLVHRVFGNGHVIKLLQGLPAEKRGDAVSSMVYEASERVRDPVHGCAGVIKDLQSKLAELQLQMES 108 6******************************************************************************************99998 PP DUF260 97 lke 99 ++ MA_39832g0010 109 TQV 111 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.518 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-36 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MSDTSAWKQE TASCSGCKIQ KKKCSDYCVL APYFPQNDPQ KFLLVHRVFG NGHVIKLLQG 60 LPAEKRGDAV SSMVYEASER VRDPVHGCAG VIKDLQSKLA ELQLQMESTQ VEIANISLQI 120 GNLLTLFTGY QQGLYPDFYT AALEDVEDTI TNPNALDDVD PLQLCSYGNH SGATALCKRK 180 GIKTDGILEN VTTMSSVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-32 | 12 | 113 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-32 | 12 | 113 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 2e-68 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | Cagra.1671s0410.1.p | 2e-43 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 9e-47 | LOB domain-containing protein 1 |