PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3940g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 477aa    MW: 50088.5 Da    PI: 8.9616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3940g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11259304555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er RR+ri + +  L+el+P+a      K +Ka++L + ++Y+k Lq
  MA_3940g0010 259 HGIAERERRERIAKNLKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304
                   7789*********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-15252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-11252308No hitNo description
PROSITE profilePS5088815.885254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14256313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-8259304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSVTPSSHMS PNLEGQAQNN DVQNSSSSVI AGENTPYLLK KLLVCNQAQN QKDLHDPVML  60
SPALNSTGPV SPHGASQILP VIGCATRGAL AMPSSAPVGA SVSEASGIQL CHGDTPSPSP  120
VQSHWAQPHM PGVSPITSVP GKGKSEGFIL NAEAIQGEGH MLGKRSRQEE DFTERENRSA  180
TTGLDGRQGP LLTNYARSQP GQQNTGLQLL QSSQGNSLQQ QGNRSVISQD QLAATAGAVL  240
NGAPRTRVRA RRGQATDPHG IAERERRERI AKNLKSLQEL VPNANKTDKA SMLDEIIDYV  300
KFLQLQVKVL SMSRLGGAGA VAPLIADVPA EGSGSLASAA LGQAGGSLSQ DGLAFEQNVV  360
KLMEKDMTAA MQYLQNKGLC LMPIALATAI SSSTGKPLLG SGVTNSVDST SDRQSSGNQP  420
ASLTVDSCSG ALGMGSAGFG RKRNREDIRG QKRLLLTSRI LEYMESILVA HIRKDVG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0865290.0EF086529.1 Picea sitchensis clone WS02911_K24 unknown mRNA.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-53LJRHL1-like 1