PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_3905g0020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26843.8 Da PI: 4.4005 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.2e-05 | 225 | 245 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C+ C++ F + s L++H MA_3905g0020 225 HVCNTCSRNFATESALTQHNA 245 79*****************66 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.907 | 225 | 251 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 227 | 248 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MGGYEDSDSD SDDDRQAQAL MRRVKENGQK EARLAKPELM KDGVKQLKPE SVLIDKAAAK 60 AKPGERKSLP GKKPEEKEES SEDDDEEDDD DDDDVDDDDD EDDEGMEGSS DDEDESDEEE 120 GDSDDESDED KNRKMPKVES SGKKRPLPDS SIKSPGTDKK AKVTPGGAQN QGTDGGKKGG 180 PKISVSKEQI PSNKGQTPKA KGGVGAKESP KPSTTPGSGK KIGQHVCNTC SRNFATESAL 240 TQHNAAKHGG K |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT119477 | 0.0 | BT119477.1 Picea glauca clone GQ04106_D18 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P2L8 | 1e-122 | A9P2L8_PICSI; Uncharacterized protein |