PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_381604g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 161aa MW: 18627.2 Da PI: 8.4383 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.8 | 8.5e-53 | 6 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...............lelee...vikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrkn 75 lppGfrFhPtdeel+++yLk k+++ vi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+n MA_381604g0010 6 LPPGFRFHPTDEELISCYLKGKLNHGLliscylkgklnhglkA---AeleVISEVDLYKLEPWDLPeKsFLPSTDMEWYFFSPRDRKYPNGSRTN 97 79*********************99998777766666655442...04549**************95344556788******************* PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 rat++gyWkatg+d++++s + +++g+kktLvfy+grap+ge+tdWvmheyrle MA_381604g0010 98 RATEAGYWKATGRDRKIYS-RASTIGIKKTLVFYRGRAPQGERTDWVMHEYRLE 150 *******************.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-55 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.985 | 6 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-29 | 7 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLLISCYLKG KLNHGLKAAE LEVISEVDLY 60 KLEPWDLPEK SFLPSTDMEW YFFSPRDRKY PNGSRTNRAT EAGYWKATGR DRKIYSRAST 120 IGIKKTLVFY RGRAPQGERT DWVMHEYRLE ENESEAGPCL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-50 | 6 | 149 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269|PubMed:25081480}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117973 | 0.0 | BT117973.1 Picea glauca clone GQ03919_D04 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020248886.1 | 3e-71 | NAC domain-containing protein 86-like isoform X1 | ||||
Refseq | XP_020248888.1 | 2e-72 | NAC domain-containing protein 86-like isoform X2 | ||||
Swissprot | A4VCM0 | 1e-66 | NAC45_ARATH; NAC domain-containing protein 45 | ||||
TrEMBL | B8LLW8 | 3e-98 | B8LLW8_PICSI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400055322 | 1e-69 | (Solanum tuberosum) | ||||
STRING | XP_008813657.1 | 7e-70 | (Phoenix dactylifera) | ||||
STRING | MLOC_71128.1 | 1e-71 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-69 | NAC domain containing protein 28 |
Publications ? help Back to Top | |||
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