PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_37851g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 417aa MW: 46873.1 Da PI: 6.5917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.4e-14 | 20 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ ++ + G+ +W+ Ia+ g+ R++k+c++rw +yl MA_37851g0010 20 KGLWSPEEDEKLITYIMKKGMLgcSWTNIAKQAGLQRCGKSCRLRWINYL 69 678*****************999*************************97 PP | |||||||
2 | Myb_DNA-binding | 46.2 | 1e-14 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++++++l+ +++ lG++ W+ Ia+ ++ gRt++++k++w++ MA_37851g0010 75 RGSFSPQDEQLIRHLHSILGNR-WSQIAASLP-GRTDNEIKNYWNT 118 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 15 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.557 | 15 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.13E-26 | 17 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-10 | 19 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 9.7E-14 | 23 | 84 | No hit | No description |
CDD | cd00167 | 1.09E-9 | 23 | 69 | No hit | No description |
PROSITE profile | PS51294 | 25.064 | 70 | 124 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 73 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.67E-10 | 77 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MWCTPEQDVP LVSPTPKLRK GLWSPEEDEK LITYIMKKGM LGCSWTNIAK QAGLQRCGKS 60 CRLRWINYLR PDLKRGSFSP QDEQLIRHLH SILGNRWSQI AASLPGRTDN EIKNYWNTCI 120 KKKKLKHNSG SSSKSDIASE SDRTCNTFSA STQDAFMVSQ SAMPEMFYPE PPSKTIHQGV 180 SSVENQYSCV DPDVLGSVKH RVQLPDFSID PDSISNQLIS SSQMWINSIS TQTQYEICNS 240 LKEERKNDGE ITSHENEIMM NYSAITACSA NSHSNAADFT DVLHVALIRI QMQLILLMSL 300 YQLVPLKSQE LVSWKIIITK ALMRKLTINV DPFCNVQAET KQDDYKDLVN SRYGEVNLGV 360 PTNRQKSYQL PQIGGVHISN QWNVTETSTT LGGEASGPLE FECEGAAGQV TVWPQDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 16 | 123 | 3 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111915 | 0.0 | BT111915.1 Picea glauca clone GQ03307_H16 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A5JYE8 | 2e-72 | A5JYE8_PICGL; R2R3-MYB transcription factor MYB4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-55 | myb domain protein 83 |