PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_37766g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 509aa    MW: 56183.5 Da    PI: 5.4238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_37766g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19110158355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAaka++a +kk++g
  MA_37766g0010 110 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDAEAKKIRG 158
                    9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.393109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-30109167IPR001471AP2/ERF domain
SMARTSM003801.4E-37109172IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21109166IPR016177DNA-binding domain
PfamPF008472.0E-12110158IPR001471AP2/ERF domain
PRINTSPR003673.2E-11110121IPR001471AP2/ERF domain
CDDcd000181.40E-32110168No hitNo description
PRINTSPR003673.2E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MCGGAIISDF IPANRSRRIT ARDLWPDFDT FAESFINGRA VSESFNKSGS FDEGFVDFDE  60
GYKQKIKPSK NIFNSKQKFS SGDENEAIPP WKDFEKSAAK SAGRKRTNLY RGIRQRPWGK  120
WAAEIRDPRK GVRVWLGTFN TAEEAAKAYD AEAKKIRGKK AKLNFANDSC SVKMDSSKKM  180
PRKKVKLCTK NPDLLLSSNI NGKVKSSNSP KPDLLEGYYI NTQMEPSLKD VCRSDLPIYG  240
YNDMEYGDSK FIKPSAPFRS NSNASTAQSS EHSNLSQTLQ KSCSCEICSH NNSEVSNFMS  300
TLYGDASIFE PVKSSHPGGY FDSDHSSISF DRAHFPWAHE TKTPEISSVY DDRNESVFVD  360
IKPPVHGVVK DGPVDTSINV DGGTESFVVE TSIEVNDGTE CFVMDTPVEV KGGTECYKTE  420
DNIGQLEFSK ELSALESYLG LSESPNLKAT IDGSIEVAGH AAGSFPDDEC SLKPWIYDDL  480
PISGSVYQSS LGYLPISGSV YQNSLGSCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21110165359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1070560.0BT107056.1 Picea glauca clone GQ03102_D15 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.34e-31related to AP2 12