PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_37058g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 309aa MW: 34888.5 Da PI: 6.0078 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.9 | 2.3e-13 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l +++k +G g+W+ +++ g++R +k+c++rw++yl MA_37058g0010 19 RGAWTGSEDKILSEYIKTHGVGRWEDLPKKAGLKRGGKSCRLRWLNYL 66 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.2 | 7e-17 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE+ell +++++lG++ W++Ia +++ gRt++++k++w++ MA_37058g0010 72 RGNISPEEEELLFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 115 7899******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.819 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.03E-27 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-12 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-12 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.48E-9 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 26.14 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 72 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-25 | 74 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-12 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MGRSPSCSSC SKHEEGLHRG AWTGSEDKIL SEYIKTHGVG RWEDLPKKAG LKRGGKSCRL 60 RWLNYLRPDI KRGNISPEEE ELLFRLHRLL GNRWSLIAGR LPGRTDNEIK NYWNTQLSKR 120 VQLGEFEPRF QKPFKRRGIS SPSNDDEGGV VDKDNYASQT LPLKTRAVRY CGRALVDGGS 180 YDYDHVPDTH DGINQEEDLK AADDHVVEID TSKSWCQLLL EDCMGDYQND RLEAINGLQP 240 NPSNGTANPS NGTDDRHQSP SPSSNQSIIL QENHSSCNLI DQEFPHSKDF NSSYFDSFLD 300 LGELSNLVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 17 | 121 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131218 | 0.0 | KU131218.1 Picea abies transcription factor MYB29 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010047497.1 | 1e-64 | PREDICTED: myb-related protein 330 | ||||
Swissprot | Q9FJA2 | 1e-53 | TT2_ARATH; Transcription factor TT2 | ||||
TrEMBL | A0A167V8X0 | 0.0 | A0A167V8X0_PICAB; Transcription factor MYB29 | ||||
STRING | Lus10033438 | 3e-64 | (Linum usitatissimum) | ||||
STRING | XP_010047497.1 | 5e-64 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-47 | MYB family protein |