PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_3688g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 309aa MW: 34770.7 Da PI: 4.5427 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 87 | 140 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t eq+++Le+ Fe+ +++ e++ +LAk lgL+ rq+ vWFqNrRa++k MA_3688g0010 87 KKRRLTLEQVRALEKNFEMANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWK 140 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.9 | 4.3e-41 | 86 | 177 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqv++LE++Fe+ +kLepe+K++la++Lglqprq+avWFqnrRAR+ktkqlEkd+++Lk+ ydalk++ ++L +e+++L++ ++ MA_3688g0010 86 EKKRRLTLEQVRALEKNFEMANKLEPEKKMQLAKALGLQPRQIAVWFQNRRARWKTKQLEKDFNVLKQDYDALKQDYDNLMEENNSLQAMIE 177 69**************************************************************************************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 34 | No hit | No description |
SuperFamily | SSF46689 | 1.71E-19 | 78 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.6E-17 | 85 | 146 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.844 | 86 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.8E-16 | 87 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.81E-17 | 87 | 143 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 89 | 149 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.7E-5 | 113 | 122 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 117 | 140 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.7E-5 | 122 | 138 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-13 | 142 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MACDRSALYT SSVIMNTEDN SSAHAIAAMI ASSCTPPATF QATRSISVFE TGNERKRPAG 60 NSYSALELSD DIGDEDGSDD CIHLGEKKRR LTLEQVRALE KNFEMANKLE PEKKMQLAKA 120 LGLQPRQIAV WFQNRRARWK TKQLEKDFNV LKQDYDALKQ DYDNLMEENN SLQAMIERMS 180 SKSQSCNDQK FQANSSKLQK DDQDLQLLMM SATKVDCADK ENNNEGPSSI GSEGSSVLDM 240 DSPGTIDSQQ NIDSIGFSNV KARDPRLECN FRPKVEENVI QADEPCNYLF YNNLETGPLL 300 WDYNWSSGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 142 | RRARWKTKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ201170 | 0.0 | DQ201170.1 Picea glauca homeobox-leucine zipper-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NV37 | 0.0 | A9NV37_PICSI; Uncharacterized protein | ||||
STRING | PP1S31_96V6.1 | 3e-49 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 2e-42 | homeobox 3 |