PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_36755g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 139aa MW: 15316.2 Da PI: 8.305 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.4 | 3e-32 | 72 | 129 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY eC+kNhAas+Gg+avDGCgEfm+s geegtaaa+kCaAC+CHRnFHRre e+e MA_36755g0010 72 KGVRYGECRKNHAASIGGYAVDGCGEFMAS-GEEGTAAAMKCAACNCHRNFHRREAENE 129 579**************************9.999*********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-22 | 72 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-30 | 74 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.6E-28 | 75 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.733 | 76 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGLQIHTQVK DLGTGEFRSV FLHRRSEAPV TRSVQIQPQS ITAEEEMRLS ELGHQTEAAA 60 AATARRVIAS RKGVRYGECR KNHAASIGGY AVDGCGEFMA SGEEGTAAAM KCAACNCHRN 120 FHRREAENET LCDCHRIRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT104838 | 0.0 | BT104838.1 Picea glauca clone GQ02815_M01 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010931461.2 | 5e-35 | mini zinc finger protein 2 | ||||
TrEMBL | A9NYD8 | 2e-94 | A9NYD8_PICSI; Uncharacterized protein | ||||
STRING | VIT_08s0056g01130.t01 | 7e-33 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 4e-31 | mini zinc finger 2 |