PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_3665g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 45486 Da PI: 6.6451 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.8 | 2.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++v+ +G g+W++++++ g+ R++k+c++rw +yl MA_3665g0010 14 KGLWSPEEDEKLMRYVTTHGHGRWSAVPKHAGLERCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.9e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++ E++l+ d+++ lG++ W+ Ia +++ gRt++++k++w++ MA_3665g0010 67 RGTFSAHEEKLITDLHAALGNR-WSQIATHLP-GRTDNEIKNFWNS 110 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.453 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.06E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.136 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.5E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MGRHLCCHKQ KLRKGLWSPE EDEKLMRYVT THGHGRWSAV PKHAGLERCG KSCRLRWINY 60 LRPDLKRGTF SAHEEKLITD LHAALGNRWS QIATHLPGRT DNEIKNFWNS CIKKKLRQLG 120 IDPDTHKLIS EAVNASDEKL SFEAQQVSIL HKVEDSFIAP APVANMSSED KCIKPSAISN 180 NAFLQKEFLD PNFCAESSSE GSNTNKHPKF MLMNPASYCS NPVLWLFPGS TISEMHGSQE 240 TLIYPGNPRF KAAEVHSTSI TPDLKQNSSE YAYNTMSCSD YSQAVATNQP IDLSPGTCLS 300 SFLSERSAIQ EELSLHSDHI QYCDNGQFWD SQDREAGKNP CILTTSQLED KDLNSLEMET 360 ATAVKWSDLL QQPFDSTVKD KVNHASCPTI AWQLQESSGF HGSCY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-28 | 12 | 116 | 5 | 108 | B-MYB |
1mse_C | 5e-28 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 5e-28 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110301 | 0.0 | BT110301.1 Picea glauca clone GQ03219_I08 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576892.1 | 2e-82 | transcription factor MYB86-like | ||||
TrEMBL | A0A222UAB9 | 1e-115 | A0A222UAB9_GINBI; R2R3MYB14 | ||||
STRING | ERN02076 | 2e-75 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 4e-78 | myb domain protein 55 |