PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_364562g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25324.3 Da PI: 7.8568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.9e-15 | 60 | 108 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ + +Wv+eI++p++ ++r+ lg+f+t+e+Aa+a++ a +l+g MA_364562g0010 60 YRGVRRRS-WEKWVSEIKEPVK---KTRICLGSFDTPEMAARAYDVAEVYLKG 108 9****887.**********643...5*********************988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-25 | 59 | 118 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.086 | 59 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.0E-27 | 59 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-18 | 60 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.25E-25 | 60 | 119 | No hit | No description |
PRINTS | PR00367 | 2.4E-7 | 60 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-8 | 60 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-7 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDKEASCLPK TMASLSTDTE LSSKSASSVK GGVKRIRTQD EPALSPPQET ALKQYPAGSY 60 RGVRRRSWEK WVSEIKEPVK KTRICLGSFD TPEMAARAYD VAEVYLKGKK HALLNFPELI 120 DHIPRPISLS PCHIQAAATE AAVAFYSASV GNSGWSSDSS KRTSRSPRNP PVGKEEASSS 180 SSSSNQLRTG IRSYFEPVSV ELSGQTDTSN SSSVCTPTEG IGESECVVVQ EDLF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ABJ6 | 2e-83 | D5ABJ6_PICSI; Uncharacterized protein | ||||
STRING | Bo9g170060.1 | 4e-31 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-32 | ERF family protein |