PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_361391g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20056.6 Da PI: 6.6607 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.4 | 1.9e-41 | 22 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++++kC+++Cvlapyfp+++p+kf vh+lFG+ +v+kll++lp e+r da+sslvyeA+ara dPv+G++gvi+ lqq++e+++a+la MA_361391g0010 22 ACAACKFQKKKCSEKCVLAPYFPQNDPNKFLLVHRLFGNGHVVKLLQDLPAEQRGDAVSSLVYEARARAADPVHGCAGVINGLQQRIEEVQAQLA 116 7********************************************************************************************** PP DUF260 96 llkee 100 ++++ MA_361391g0010 117 FTQAK 121 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.444 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-40 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MRAGTLFPAE RSQQVLSKAE TACAACKFQK KKCSEKCVLA PYFPQNDPNK FLLVHRLFGN 60 GHVVKLLQDL PAEQRGDAVS SLVYEARARA ADPVHGCAGV INGLQQRIEE VQAQLAFTQA 120 KLDNITVQHS NILITLNNTR YHQGWDPNFY SPSSQASQDT QYSNPPVLDD EVDSLQLWET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-32 | 19 | 115 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-32 | 19 | 115 | 8 | 104 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008224697.1 | 2e-45 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 7e-43 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | B8LQI9 | 2e-61 | B8LQI9_PICSI; Uncharacterized protein | ||||
STRING | XP_008224697.1 | 9e-45 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-38 | LOB domain-containing protein 1 |