PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_357706g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 344aa    MW: 38562.4 Da    PI: 7.0696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_357706g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003278100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C  C++ F++   L  H+++H
  MA_357706g0010  78 YSCDFCKRDFRSAQALGGHMNVH 100
                     99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.53E-675105No hitNo description
PfamPF139121.8E-578101IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.11578105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MVEAALERGI VMCNYPLMAA NLMITFREDV PAAGTTETWM SRGLIPPRVE DGNESWEERA  60
FAENTAALIG GIWPPRSYSC DFCKRDFRSA QALGGHMNVH RRDRALLRQS SSTHLAPPDH  120
QRWSSPSPVR PEIPSHYQLP VFNSNFDENS WLNPVTPNPS IVSSSQLLPS SSIMPAPSLP  180
INSHITYDPM QQQRRHINSH ITYDPMQQQR RHEILPSTVL SISPYSPSEH AFPTFPSSPP  240
VSNSLAMNIP KSLHSMEISG FDRRHGGFAS SVAESAAVLR KLQQARTFRP CFPVTCLRKQ  300
NKSSSVHDIR INNLQHEEAI NLDEDHDSTV DGLDLELRLG QTKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-1273100229superman protein
2l1o_A3e-1273100229Transcriptional regulator SUPERMAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1112620.0BT111262.1 Picea glauca clone GQ03235_A05 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.18e-27zinc-finger protein 10