PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_357706g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 344aa MW: 38562.4 Da PI: 7.0696 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H+++H MA_357706g0010 78 YSCDFCKRDFRSAQALGGHMNVH 100 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.53E-6 | 75 | 105 | No hit | No description |
Pfam | PF13912 | 1.8E-5 | 78 | 101 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.115 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MVEAALERGI VMCNYPLMAA NLMITFREDV PAAGTTETWM SRGLIPPRVE DGNESWEERA 60 FAENTAALIG GIWPPRSYSC DFCKRDFRSA QALGGHMNVH RRDRALLRQS SSTHLAPPDH 120 QRWSSPSPVR PEIPSHYQLP VFNSNFDENS WLNPVTPNPS IVSSSQLLPS SSIMPAPSLP 180 INSHITYDPM QQQRRHINSH ITYDPMQQQR RHEILPSTVL SISPYSPSEH AFPTFPSSPP 240 VSNSLAMNIP KSLHSMEISG FDRRHGGFAS SVAESAAVLR KLQQARTFRP CFPVTCLRKQ 300 NKSSSVHDIR INNLQHEEAI NLDEDHDSTV DGLDLELRLG QTKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 3e-12 | 73 | 100 | 2 | 29 | superman protein |
2l1o_A | 3e-12 | 73 | 100 | 2 | 29 | Transcriptional regulator SUPERMAN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111262 | 0.0 | BT111262.1 Picea glauca clone GQ03235_A05 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 8e-27 | zinc-finger protein 10 |