PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3555g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 348aa    MW: 38866.4 Da    PI: 7.261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3555g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05185204120
                   EEETTTTEEESSHHHHHHHH CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                   ++C  C+k+F+r  n++ H+
  MA_3555g0010 185 FSCAVCNKTFNRYNNMQMHM 204
                   89*****************9 PP
2zf-C2H212.20.00057269291123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   + C +C+k F  + + ++H +++
  MA_3555g0010 269 FACRKCSKAFAVRGDWRTHEKNC 291
                   78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.22E-5165206No hitNo description
PROSITE profilePS5015710.221185212IPR007087Zinc finger, C2H2
PfamPF128741.3E-4185204No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5185204IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.34185207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
PROSITE profilePS508688.086227243IPR003616Post-SET domain
SuperFamilySSF576675.08E-6250289No hitNo description
Gene3DG3DSA:3.30.160.604.7E-5256289IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578269289IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSWRSVDLSS HQSYVAVPLH GIPFSREWAM DPLVSHLPAG FPFPYDHSAA VSSPTYRAQA  60
DSSSLLSFRH LPYAHPISSH HKPTPPQNDA DDYDEEEEPI LSLRPPGQTD PALKKSNTQP  120
SYATEEESDD NVTVALHIGP PTSVPLDCDA VSSVNDGCFQ AKERPAMGQY WIPTPSQILV  180
GPTQFSCAVC NKTFNRYNNM QMHMWGHGSQ YRKGPDSLRG TKPSAIMRLP CYCCAPGCRN  240
SIDHPRSKPL KDFRTLQTHY KRKHGMKPFA CRKCSKAFAV RGDWRTHEKN CGKLWFCTCG  300
SDFKHKRSLK DHIRAFGQGH APHGVESCED DDDPPSEEVD DVNSGTSQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396645.11e-130zinc finger protein WIP6-like
SwissprotQ9FX681e-113ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2K1JDJ61e-129A0A2K1JDJ6_PHYPA; Uncharacterized protein
TrEMBLA9TCE81e-130A9TCE8_PHYPA; Predicted protein
STRINGPP1S359_44V6.11e-132(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-115C2H2-like zinc finger protein