PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3405g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 295aa    MW: 33257.1 Da    PI: 5.0916
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3405g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18177227255
           AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   +++GVr+++ +g+++AeIrd       +  r++lg+f+taeeAa a+++a+ k++g
  MA_3405g0010 177 HFRGVRRRP-WGKFAAEIRD----SarQGSRVWLGTFDTAEEAAFAYDRAAYKMRG 227
                   69*******.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-30176235IPR001471AP2/ERF domain
PfamPF008478.0E-13177227IPR001471AP2/ERF domain
CDDcd000181.15E-28177235No hitNo description
SuperFamilySSF541716.34E-23177237IPR016177DNA-binding domain
SMARTSM003803.1E-37177241IPR001471AP2/ERF domain
PROSITE profilePS5103223.354177235IPR001471AP2/ERF domain
PRINTSPR003671.8E-10178189IPR001471AP2/ERF domain
PRINTSPR003671.8E-10201217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNVLDQIRQH LLGESDGSPS FCTGSPAESC LTENYASSNS WNASDELDSG FVQSALVSDF  60
VEEEQTTTEN QPCGGTRFSR PVLSVTVPRR ECFEWERRSV SWGVDSRNFV TACCPASIRR  120
CLSCEWGKLP LDENDSEDMV LLGVLKEATQ KGWTPLTPKE IKNADLSEKE KKSGERHFRG  180
VRRRPWGKFA AEIRDSARQG SRVWLGTFDT AEEAAFAYDR AAYKMRGTKA LLNFPLDVVS  240
KSMDTLREDE SCCRKRKLNE QAVRGEEKRP KSEQCGVDSE ESIVVEDGEQ KRFAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-30176240468ATERF1
3gcc_A5e-30176240468ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1168550.0BT116855.1 Picea glauca clone GQ03808_A03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026415277.18e-51ethylene-responsive transcription factor 1A-like
TrEMBLA9NRQ51e-75A9NRQ5_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-34ethylene responsive element binding factor 1