PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_33846g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

CPP

Protein Properties

Length: 1117aa MW: 120795 Da PI: 6.2254

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_33846g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.7	1.5e-15	649	687	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk e MA_33846g0010 649 CKRCNCKKSKCLKLYCECFAAGVYCVEPCTCQECFNKPE 687 89**********************************976 PP
2	TCR	51.2	2.6e-16	733	771	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ag+ Cs+ C+Ce+CkN MA_33846g0010 733 RHKRGCNCKKSMCLKKYCECYQAGVGCSDGCRCEGCKNV 771 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.5E-16	647	688	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.639	648	773	IPR005172	CRC domain
Pfam	PF03638	1.9E-11	650	685	IPR005172	CRC domain
SMART	SM01114	3.1E-18	733	774	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.0E-12	735	770	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1117 aa Download sequence Send to blast
MEMDSPDRNL NTPSSAVQGS PFFNYLCNLS PIKQVKSVHV AQTFSELNFP PPPAVFTSPR 60 VPSQKESNFL KRSYQKDTRD EENKSDDTPC EKVKDFAVPM SDCDVPASLN PLARQIKNFN 120 SLASDQTKCE DNTMSTFASC SPSKLLEEYL ADPAEEENYT VDSSKNYLKS TSPGLVNSLV 180 VDSDKQQETV NQCSKMKDTE MIPQPNFPEE FLGTGKIATE AETSQGDEEG TFSLNSEGSM 240 KVSAVREMGH ADQNDTEGLS SVWSDVDGHH SNIMFANNCE SSETGASHDE NLMDQTAGTF 300 AFILSKGSTC DIEEWQKASS ADCSAGDPNM KLDTEQNRVV EHQTSFGCKP GNQSQRGIRR 360 RCLDFEASEA QRKTMSNRSW NSTSLMPKTD VLVNSAHDSD TNTSSSVSCE KGVTSDCKQI 420 VPLKRETGAD IGRISQSSAN VRFSSFSSKS TELTSDKSDS NIRNNGNTPI SVGIPSGIGL 480 HLNSLATTMP LNSGVNMLTS AKGSVSTQGM SPSSGVKETS SDVVGSSLPS VNSGGNISVG 540 TNSNIASGMV VSMVEKTRID QQELQSSGMT QIGVTRSTTC FRSVTVGIKP LQSRLPFKSE 600 ERNLSPLGKK RPALLDISQQ SPFGIGEEFS QSSPKKKRKS TTIGDKEGCK RCNCKKSKCL 660 KLYCECFAAG VYCVEPCTCQ ECFNKPEYED MVLGTRQQIE SRNPLAFAPK IVRGADSPPT 720 NGDECGETPS SARHKRGCNC KKSMCLKKYC ECYQAGVGCS DGCRCEGCKN VYGKKEGGSD 780 DIEENETPIE GWDKDSLEEK TEVLDVENDI LLSEQQHAKD LSPLTPSFQY SGQGKSSAKL 840 NSCGKKHFTS EDVESPTVSQ SSAKPPRSPG KILRPTKGLQ GNITAIHNRQ AGSRTSASPI 900 FTPKMDKSGQ FSPQWDCLAD ICTLTPMLHP PMRPSATSAS NVDGIDVSPF SGQHNEISSM 960 TSRPLASRHS CHVGSSLGFR QPAARSPICT SDNIHWQTPV NAKVTPVTPA LSTTACTAGN 1020 KLSDGSDFDL QSHDVSGSLE DDTPDILKNN CSPTRGLKAS SPNQKRVSPP HNYCPKEMMN 1080 RRPISSPGIR SGRKYILQSV PSFPPLTPLS GEGQANE

Sequence ? help Back to Top

Protein Sequence Length: 1117 aa Download sequence Send to blast

MEMDSPDRNL NTPSSAVQGS PFFNYLCNLS PIKQVKSVHV AQTFSELNFP PPPAVFTSPR  60
VPSQKESNFL KRSYQKDTRD EENKSDDTPC EKVKDFAVPM SDCDVPASLN PLARQIKNFN  120
SLASDQTKCE DNTMSTFASC SPSKLLEEYL ADPAEEENYT VDSSKNYLKS TSPGLVNSLV  180
VDSDKQQETV NQCSKMKDTE MIPQPNFPEE FLGTGKIATE AETSQGDEEG TFSLNSEGSM  240
KVSAVREMGH ADQNDTEGLS SVWSDVDGHH SNIMFANNCE SSETGASHDE NLMDQTAGTF  300
AFILSKGSTC DIEEWQKASS ADCSAGDPNM KLDTEQNRVV EHQTSFGCKP GNQSQRGIRR  360
RCLDFEASEA QRKTMSNRSW NSTSLMPKTD VLVNSAHDSD TNTSSSVSCE KGVTSDCKQI  420
VPLKRETGAD IGRISQSSAN VRFSSFSSKS TELTSDKSDS NIRNNGNTPI SVGIPSGIGL  480
HLNSLATTMP LNSGVNMLTS AKGSVSTQGM SPSSGVKETS SDVVGSSLPS VNSGGNISVG  540
TNSNIASGMV VSMVEKTRID QQELQSSGMT QIGVTRSTTC FRSVTVGIKP LQSRLPFKSE  600
ERNLSPLGKK RPALLDISQQ SPFGIGEEFS QSSPKKKRKS TTIGDKEGCK RCNCKKSKCL  660
KLYCECFAAG VYCVEPCTCQ ECFNKPEYED MVLGTRQQIE SRNPLAFAPK IVRGADSPPT  720
NGDECGETPS SARHKRGCNC KKSMCLKKYC ECYQAGVGCS DGCRCEGCKN VYGKKEGGSD  780
DIEENETPIE GWDKDSLEEK TEVLDVENDI LLSEQQHAKD LSPLTPSFQY SGQGKSSAKL  840
NSCGKKHFTS EDVESPTVSQ SSAKPPRSPG KILRPTKGLQ GNITAIHNRQ AGSRTSASPI  900
FTPKMDKSGQ FSPQWDCLAD ICTLTPMLHP PMRPSATSAS NVDGIDVSPF SGQHNEISSM  960
TSRPLASRHS CHVGSSLGFR QPAARSPICT SDNIHWQTPV NAKVTPVTPA LSTTACTAGN  1020
KLSDGSDFDL QSHDVSGSLE DDTPDILKNN CSPTRGLKAS SPNQKRVSPP HNYCPKEMMN  1080
RRPISSPGIR SGRKYILQSV PSFPPLTPLS GEGQANE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-18	652	771	14	121	Protein lin-54 homolog
5fd3_B	1e-18	652	771	14	121	Protein lin-54 homolog

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	633	639	PKKKRKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00624	PBM	Transfer from PK22848.1	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123813	0.0	BT123813.1 Picea sitchensis clone WS04717_J09 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP993	17	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	2e-73	TESMIN/TSO1-like CXC 2