PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_335624g0020

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

G2-like

Protein Properties

Length: 356aa MW: 39037.1 Da PI: 8.0281

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_335624g0020	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.6	5.7e-33	273	327	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+WtpeLHerFveav+qLGG+e+AtPk +l++m+ +gLt++hvkSHLQkYR+ MA_335624g0020 273 KTRLKWTPELHERFVEAVTQLGGAERATPKGVLKFMDSEGLTIYHVKSHLQKYRI 327 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.074	270	330	IPR017930	Myb domain
SuperFamily	SSF46689	7.88E-17	271	327	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-30	271	328	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-23	273	328	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-9	275	326	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MKRQKLQGLS YCGGDIMVSR HAFPAPMTSG ESWSPACSSH LLPQNLSPNC FVPSDYSVFS 60 SSSSYKEPSN STFVQPNVIS NMVRPVSMTL CTNLQSSKPI ASQQQPSPFD SLPLIYPPSK 120 SPVQSQQSGV CEPAFFRDSS KSNSQDAGLG DLFHDILSFP QNGLDSQPLE NIDASRIAPQ 180 YDPNQSEWHT WANKFASPDD ALCGGCWKEP ANIDNNPKTG LNTIYQTPTV STTDVGSHHT 240 QLQPQLCQHI VAPTVGTHLA TSPTAFGTAA SSKTRLKWTP ELHERFVEAV TQLGGAERAT 300 PKGVLKFMDS EGLTIYHVKS HLQKYRIAKY IPKHAEGKLK FFLVMKISMY ITSNAL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MKRQKLQGLS YCGGDIMVSR HAFPAPMTSG ESWSPACSSH LLPQNLSPNC FVPSDYSVFS  60
SSSSYKEPSN STFVQPNVIS NMVRPVSMTL CTNLQSSKPI ASQQQPSPFD SLPLIYPPSK  120
SPVQSQQSGV CEPAFFRDSS KSNSQDAGLG DLFHDILSFP QNGLDSQPLE NIDASRIAPQ  180
YDPNQSEWHT WANKFASPDD ALCGGCWKEP ANIDNNPKTG LNTIYQTPTV STTDVGSHHT  240
QLQPQLCQHI VAPTVGTHLA TSPTAFGTAA SSKTRLKWTP ELHERFVEAV TQLGGAERAT  300
PKGVLKFMDS EGLTIYHVKS HLQKYRIAKY IPKHAEGKLK FFLVMKISMY ITSNAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-27	273	330	2	59	Protein PHOSPHATE STARVATION RESPONSE 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.4	3e-32	G2-like family protein