PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_33034g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 461aa MW: 53136.8 Da PI: 5.6869

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_33034g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	182	205	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H + H MA_33034g0010 182 YICGVCGRKCKNNVDLKKHFKQlH 205 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.1E-7	102	172	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.824	182	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	184	205	IPR007087	Zinc finger, C2H2
CDD	cd06167	3.22E-14	195	335	No hit	No description
Pfam	PF01936	4.7E-6	257	331	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	1.1E-7	267	322	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MALLGNLSLQ TSFLYCNSNN LQYFPKPRPL CYPPLHTHSL EPIKAIFENR WAPSGGESNK 60 SINILPPEPQ KTEGLNFQSF QLGIPHNGLT LQGMDREAVP VKQKKVAVYW DLDNKPPKVR 120 PFDVAMSVRE MARRFGEVID LSAYANRHAF THVPQWVVEE RRERKKLDFL ESKGLVIPVQ 180 PYICGVCGRK CKNNVDLKKH FKQLHERERQ KRLSRLNSLK GRRKAKFKEQ YREKDEKYKN 240 AAQNLLFPKV GYGLASELKR AGVYVKTVED KPQAADAALK RQIQHSMTRG IDCLCIISDD 300 SDFSEMLNKA RNNNIRTVVL GDGKALKRYA DLWLSWDQVA TGNAWDEIDT VVRKWSIEEA 360 VIDGIAEIQD TIMSEDYKHD LDESDSEIDQ IAEEIVKAQG TLNNFGRVSA FSEDEQQMQT 420 ENEIENLERH SYDDDHYDDW DSDEDTELDD EEETNFLKHT S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MALLGNLSLQ TSFLYCNSNN LQYFPKPRPL CYPPLHTHSL EPIKAIFENR WAPSGGESNK  60
SINILPPEPQ KTEGLNFQSF QLGIPHNGLT LQGMDREAVP VKQKKVAVYW DLDNKPPKVR  120
PFDVAMSVRE MARRFGEVID LSAYANRHAF THVPQWVVEE RRERKKLDFL ESKGLVIPVQ  180
PYICGVCGRK CKNNVDLKKH FKQLHERERQ KRLSRLNSLK GRRKAKFKEQ YREKDEKYKN  240
AAQNLLFPKV GYGLASELKR AGVYVKTVED KPQAADAALK RQIQHSMTRG IDCLCIISDD  300
SDFSEMLNKA RNNNIRTVVL GDGKALKRYA DLWLSWDQVA TGNAWDEIDT VVRKWSIEEA  360
VIDGIAEIQD TIMSEDYKHD LDESDSEIDQ IAEEIVKAQG TLNNFGRVSA FSEDEQQMQT  420
ENEIENLERH SYDDDHYDDW DSDEDTELDD EEETNFLKHT S

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT103862	0.0	BT103862.1 Picea glauca clone GQ02803_C18 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022937287.1	1e-123	uncharacterized protein LOC111443617
TrEMBL	A0A2N9H6H6	1e-121	A0A2N9H6H6_FAGSY; Uncharacterized protein
STRING	XP_008452587.1	1e-121	(Cucumis melo)
STRING	XP_008357383.1	1e-121	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3048	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-110	C2H2-like zinc finger protein