PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_329325g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 200aa    MW: 21596.1 Da    PI: 7.8689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_329325g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19105156256
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdp   g k +r++lg+f taeeAa a+++a+ +++g+
  MA_329325g0010 105 RYRGVRQRP-WGKFAAEIRDP---GkKGARVWLGTFSTAEEAALAYDRAAFRIRGA 156
                     7********.**********9...6556*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-23105164IPR016177DNA-binding domain
PROSITE profilePS5103224.408105163IPR001471AP2/ERF domain
SMARTSM003802.4E-37105169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-31105163IPR001471AP2/ERF domain
PfamPF008476.8E-14105155IPR001471AP2/ERF domain
CDDcd000185.59E-31105163No hitNo description
PRINTSPR003673.2E-11106117IPR001471AP2/ERF domain
PRINTSPR003673.2E-11129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNAAEASLNV NMLELIRHHL LEAEDDVDFT DIGGNSSSIS SSLFCTTGGS CQNSSSITIS  60
ENIGSEFTQP NCSSSSSVCS VISGAETCEV KAQENREMKK SRARRYRGVR QRPWGKFAAE  120
IRDPGKKGAR VWLGTFSTAE EAALAYDRAA FRIRGARALV NFPLAFASNS ENGSAVGHKV  180
QKRKRGNDEG EVAEGLVLFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33101164164ATERF1
3gcc_A3e-33101164164ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0824031e-84EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NMA33e-61A9NMA3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-25ethylene responsive element binding factor 2