PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_329325g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21596.1 Da PI: 7.8689 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 105 | 156 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp g k +r++lg+f taeeAa a+++a+ +++g+ MA_329325g0010 105 RYRGVRQRP-WGKFAAEIRDP---GkKGARVWLGTFSTAEEAALAYDRAAFRIRGA 156 7********.**********9...6556*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-23 | 105 | 164 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.408 | 105 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 105 | 169 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-31 | 105 | 163 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-14 | 105 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.59E-31 | 105 | 163 | No hit | No description |
PRINTS | PR00367 | 3.2E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-11 | 129 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MNAAEASLNV NMLELIRHHL LEAEDDVDFT DIGGNSSSIS SSLFCTTGGS CQNSSSITIS 60 ENIGSEFTQP NCSSSSSVCS VISGAETCEV KAQENREMKK SRARRYRGVR QRPWGKFAAE 120 IRDPGKKGAR VWLGTFSTAE EAALAYDRAA FRIRGARALV NFPLAFASNS ENGSAVGHKV 180 QKRKRGNDEG EVAEGLVLFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-33 | 101 | 164 | 1 | 64 | ATERF1 |
3gcc_A | 3e-33 | 101 | 164 | 1 | 64 | ATERF1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF082403 | 1e-84 | EF082403.1 Picea sitchensis clone WS0282_K22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NMA3 | 3e-61 | A9NMA3_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47220.1 | 1e-25 | ethylene responsive element binding factor 2 |