PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_32763g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 272aa    MW: 30583.8 Da    PI: 6.3695
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_32763g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.74.8e-49161421128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lp+GfrF+Ptdeel+ +yLkkkv++++++  +vi+e+d+yk++PwdLp+k+  +ekewyfFs+rd +y++g  +nr++ sgyWkatg+dk+++ ++
  MA_32763g0010  16 LPVGFRFEPTDEELLIYYLKKKVSSSPFPG-SVIAEIDLYKHDPWDLPAKAFFGEKEWYFFSPRDPEYPNGAPPNRSAGSGYWKATGTDKPIVITS 110
                    79***************************9.99***************8777899***************************************** PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++vg+kk+Lvfykg   +g kt+W+mheyrl
  MA_32763g0010 111 SQKVGVKKSLVFYKGMPLQGLKTNWIMHEYRL 142
                    ******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-5910166IPR003441NAC domain
PROSITE profilePS5100556.34416167IPR003441NAC domain
PfamPF023658.7E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTMEGLAFHQ QMLLQLPVGF RFEPTDEELL IYYLKKKVSS SPFPGSVIAE IDLYKHDPWD  60
LPAKAFFGEK EWYFFSPRDP EYPNGAPPNR SAGSGYWKAT GTDKPIVITS SQKVGVKKSL  120
VFYKGMPLQG LKTNWIMHEY RLAETLPSEK KGSMLLDDWV LCRIYEKVSY SPMVVSCQDV  180
EPLSPDVRRT RQKSAMPKFS SFSRLLLRDG PFMERLLSHA TSDANNAAVS STESLTSLQE  240
DLPQRNSSEG GSHVSMSLGF NGDEVSSEYP AT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-701416915167NO APICAL MERISTEM PROTEIN
1ut4_B3e-701416915167NO APICAL MERISTEM PROTEIN
1ut7_A3e-701416915167NO APICAL MERISTEM PROTEIN
1ut7_B3e-701416915167NO APICAL MERISTEM PROTEIN
3swm_A3e-701416918170NAC domain-containing protein 19
3swm_B3e-701416918170NAC domain-containing protein 19
3swm_C3e-701416918170NAC domain-containing protein 19
3swm_D3e-701416918170NAC domain-containing protein 19
3swp_A3e-701416918170NAC domain-containing protein 19
3swp_B3e-701416918170NAC domain-containing protein 19
3swp_C3e-701416918170NAC domain-containing protein 19
3swp_D3e-701416918170NAC domain-containing protein 19
4dul_A3e-701416915167NAC domain-containing protein 19
4dul_B3e-701416915167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193RRTRQKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1236840.0BT123684.1 Picea sitchensis clone WS04716_A09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095244.16e-79NAC transcription factor 56-like
SwissprotQ8GY423e-73NAC25_ARATH; NAC transcription factor 25
TrEMBLD5ABS00.0D5ABS0_PICSI; Uncharacterized protein
STRINGEFJ226643e-76(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.23e-76NAC domain containing protein 47