PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_323706g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 39963 Da PI: 6.3689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed +l ++++ +G g W+t +++ g++R++k+c++rw++yl MA_323706g0010 14 RGAWTKTEDIILCEYIRIHGDGGWRTLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50 | 7e-16 | 68 | 111 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ MA_323706g0010 68 GGISPDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTC 111 5569*****************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.523 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.79E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.51E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.338 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.04E-11 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTKT EDIILCEYIR IHGDGGWRTL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGGI SPDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT CLSKKLLLSM 120 NKSQSKVTKN VKSTSKSSPV QNRVFKTTPV KVTTAVRLSE TIRPKGSMNG YGCSNRSSDE 180 AFKLCNAKET TNSSKSWCDL LGNDTEGRIS NSSMSLALER SPNSYYFGTD AATLADSLLD 240 LNELSSPDCS LLSPPSNCSA DFGLQDFCGE PVTLTAEANE FEVVSSDQSI MQRDKGFTVL 300 DDQGIEEFYD HTQPLDWIHE LDYIEKSSPR ALSFLLLESE DEREEKLGDH TQIPDVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU131220 | 0.0 | KU131220.1 Picea abies transcription factor MYB31 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9S9K9 | 2e-60 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A167V911 | 0.0 | A0A167V911_PICAB; Transcription factor MYB31 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-50 | myb domain protein 3 |