PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_32163g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 301aa    MW: 34472.5 Da    PI: 6.5584
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_32163g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.0009161185123
                    EEETTTTEEESSHHHHHHHHHH..T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                    + C+ C+k ++  ++++ H+++  H
  MA_32163g0010 161 FFCELCNKQYKLAMEFEAHLSSydH 185
                    67*****************987555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004433.5E-1864109IPR000467G-patch domain
PROSITE profilePS5017416.8766111IPR000467G-patch domain
PfamPF015856.0E-1667107IPR000467G-patch domain
SuperFamilySSF576679.16E-5159192No hitNo description
PfamPF121715.0E-5161188IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280163185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MENRWSNNQN GTSAQEKRQR EREEAYEASL VEDLGEDFRL PINHRPTENL DTDNLEQASV  60
DTQLTSSNIG FRLLQKMGWK GKGLGKEEQG IIEPIKAGVR DAKLGVGKQE QDDYFTSEEN  120
IQRKKLEVEV EETEELTKKR EVVAEREQKI QSEVKEIRKV FFCELCNKQY KLAMEFEAHL  180
SSYDHNHRKR FKEMKEMYSA SSRDDRQKRE QLRQEREMAK FVQIADAQRS QQQQEESGAV  240
PASGIVRTAT SLAVQDQRKT LKFGFATKAV PSKTSLGVAS KKAKVLSKVS SVFGDASDEE  300
S
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1107660.0BT110766.1 Picea glauca clone GQ03227_J06 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241427.11e-166PREDICTED: G patch domain-containing protein 8-like isoform X1
RefseqXP_010241428.11e-166PREDICTED: G patch domain-containing protein 8-like isoform X1
TrEMBLA0A1U7Z2G91e-165A0A1U7Z2G9_NELNU; G patch domain-containing protein 8-like isoform X1
STRINGXP_010241427.11e-166(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP637078