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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | MA_321195g0010 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 184aa MW: 20979.8 Da PI: 8.6797 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 33.3 | 9e-11 | 1 | 47 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++E++RR++++ f+ L++llP + +K + ++ + +Av+Y+++Lq
MA_321195g0010 1 MIEKQRRKEMKALFSALKSLLPDeN---LRGKRTVSDQVLEAVNYVRHLQ 47
69*********************66...9********************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.36E-12 | 1 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.172 | 1 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 3.04E-8 | 1 | 51 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 5.8E-10 | 1 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.0E-7 | 1 | 47 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 184 aa Download sequence Send to blast |
MIEKQRRKEM KALFSALKSL LPDENLRGKR TVSDQVLEAV NYVRHLQRKV QYLSAEREKM 60 KANCDQNAKV AMEKFVNKTP PFEESDRECP ALKINSGSSG VQIWTNSLED EIVYSDILVE 120 LEGGGLEVVS AASSTINNRV YHTIHAKVLD LNNFNVDTLY HKLRHLIRTN HTQTQNLQTA 180 EARA |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | B8LNH5 | 2e-93 | B8LNH5_PICSI; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP1638 | 8 | 38 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G51780.1 | 1e-17 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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