PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_316475g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24610.8 Da PI: 8.7974 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.1e-10 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++ +G g + R++k+c++rw +yl MA_316475g0010 14 KGAWSKEEDEILIAYIQAHGEG----------LQRCGKSCRLRWINYL 51 79******************99..........46************97 PP | |||||||
2 | Myb_DNA-binding | 60.9 | 2.6e-19 | 72 | 117 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEdel+++++ +lG++ W++Ia++++ gRt++++k++w++++ MA_316475g0010 72 RGNFSQEEDELIIKLHSMLGNK-WSLIASKLP-GRTDNEIKNYWNTHM 117 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-12 | 5 | 52 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.793 | 9 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.55E-9 | 9 | 51 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-6 | 13 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-8 | 14 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-12 | 53 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-23 | 53 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 29.171 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-18 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 72 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.76E-13 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-25 | 80 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRSPCCEKT HTNKGAWSKE EDEILIAYIQ AHGEGLQRCG KSCRLRWINY LQRCGKSCRL 60 RWINYLRPDL KRGNFSQEED ELIIKLHSML GNKWSLIASK LPGRTDNEIK NYWNTHMKRK 120 LSAIRGVDPY NTHPDHGSSF QSSSEYIHVL PKRRCKPNEV CTDFFQQQQQ ITPGTTWSEQ 180 KVISTGHEDV NLELSITLPS LCSEVQGASS NSSKG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 13 | 121 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431803.1 | 3e-70 | PREDICTED: transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 3e-69 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A222UB09 | 1e-71 | A0A222UB09_GINBI; R2R3MYB1 | ||||
STRING | XP_010431803.1 | 1e-69 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-71 | myb domain protein 4 |