PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_3123g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24399.1 Da PI: 5.5194 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.4 | 7.2e-36 | 7 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+k+Cv+apyf++++ + +f ++hk+FGasn +kll +lp +er d+++++ yeA+ar++dPv+G+v++i +lq+q+++lk +la MA_3123g0010 7 SCGACKFLRRKCVKGCVFAPYFCSDEmgAPHFGAIHKVFGASNFSKLLMHLPVQERYDTVATVSYEAQARLQDPVHGCVSHIVALQHQVANLKGKLA 103 6***********************995569**************************************************************99987 PP DUF260 96 l 96 + MA_3123g0010 104 V 104 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.374 | 6 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-34 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MGGGGTSCGA CKFLRRKCVK GCVFAPYFCS DEMGAPHFGA IHKVFGASNF SKLLMHLPVQ 60 ERYDTVATVS YEAQARLQDP VHGCVSHIVA LQHQVANLKG KLAVGYAQLA ACSSSDGASV 120 GPEYGYGQQS EMSSLISNSN SSSPYNQQCL NPWGDPQSIP PENVAVNGED EGSWGSFSVC 180 AQGAVHPPST AQETDVFQDA EAFSEQKQPN NYRDGDLQDL ASALLRRNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-33 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-33 | 3 | 109 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q5UG13 | 2e-46 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
STRING | Lus10033872 | 7e-50 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 6e-48 | LBD family protein |
Publications ? help Back to Top | |||
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