PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_30401g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 34840.7 Da PI: 6.985 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 170 | 192 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C++ F++ L H rtH MA_30401g0010 170 HECPVCHRNFPSGQALGGHKRTH 192 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.5E-5 | 168 | 194 | No hit | No description |
Pfam | PF13912 | 2.3E-12 | 170 | 193 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 170 | 197 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MAATPSVAAE VGEDSVYQFR SLDMEPPHLA SAIKGKRSRR SRNSLSLIPK SEIAAWQQED 60 RDPEEEEEDE QEMAARCLMM LLSDGIDSQS HSPTTTSSSE SLAPTTLHPI RRRIKKPKRA 120 SCHYKSKSVF PRLQTHEGFK EEAAHFSIKG PSVETYKQSL CTEVKKVRLH ECPVCHRNFP 180 SGQALGGHKR THSTPPATTI HTHTSLSTTE QQHFSPPRRT ETLDLNMPAE DANDCVQMQH 240 SSAVSVNLGG DFLDSTSWTP YDHQLVSYNS SQPWWTESHQ PGHVVREDEA DSKLGSNSGF 300 VRGRDLGCKR AGA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT117544 | 0.0 | BT117544.1 Picea glauca clone GQ03902_N14 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 9e-11 | C2H2-like zinc finger protein |