PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_30401g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 313aa    MW: 34840.7 Da    PI: 6.985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_30401g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044170192123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++Cp C++ F++   L  H rtH
  MA_30401g0010 170 HECPVCHRNFPSGQALGGHKRTH 192
                    79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.5E-5168194No hitNo description
PfamPF139122.3E-12170193IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.014170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAATPSVAAE VGEDSVYQFR SLDMEPPHLA SAIKGKRSRR SRNSLSLIPK SEIAAWQQED  60
RDPEEEEEDE QEMAARCLMM LLSDGIDSQS HSPTTTSSSE SLAPTTLHPI RRRIKKPKRA  120
SCHYKSKSVF PRLQTHEGFK EEAAHFSIKG PSVETYKQSL CTEVKKVRLH ECPVCHRNFP  180
SGQALGGHKR THSTPPATTI HTHTSLSTTE QQHFSPPRRT ETLDLNMPAE DANDCVQMQH  240
SSAVSVNLGG DFLDSTSWTP YDHQLVSYNS SQPWWTESHQ PGHVVREDEA DSKLGSNSGF  300
VRGRDLGCKR AGA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175440.0BT117544.1 Picea glauca clone GQ03902_N14 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-11C2H2-like zinc finger protein