PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_303404g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 167aa MW: 19553 Da PI: 6.089 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 97 | 130 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++e+ LA+ +gL+++q+ +WF N+R ++ MA_303404g0010 97 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 130 58*****************************985 PP | |||||||
2 | ELK | 43.9 | 5e-15 | 50 | 71 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqEF+ MA_303404g0010 50 ELKDHLLRKYSGYLSSLKQEFM 71 9********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 2.0E-8 | 50 | 71 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.575 | 50 | 70 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.4E-12 | 50 | 71 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.082 | 70 | 133 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-20 | 72 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.8E-12 | 72 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-28 | 75 | 136 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.8E-17 | 90 | 129 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 7.58E-12 | 96 | 134 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
MSLMCYYFSF IAAENDEKTE GGASSEEVED GSGGETDFQE VDHHAVEDRE LKDHLLRKYS 60 GYLSSLKQEF MKKKKKGKLP KDARQKLLDW WTVHYKWPYP SETEKIALAE CTGLDQKQIN 120 NWFINQRKRH WKPSEDMQLM AMDGQSPHGA TLYVERHLMT EGYHLDC |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT106023 | 0.0 | BT106023.1 Picea glauca clone GQ02901_I15 mRNA sequence. | |||
GenBank | EF083732 | 0.0 | EF083732.1 Picea sitchensis clone WS0299_H19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285521.1 | 1e-67 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-64 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A9NR06 | 1e-113 | A9NR06_PICSI; Uncharacterized protein | ||||
TrEMBL | Q9ZR90 | 1e-111 | Q9ZR90_PICMA; Homeobox transcription factor SKN2 | ||||
TrEMBL | Q9ZTC0 | 1e-112 | Q9ZTC0_PICAB; Homeobox protein | ||||
STRING | VIT_18s0001g08380.t01 | 4e-67 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-55 | KNOTTED-like from Arabidopsis thaliana |