PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_29913g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family HSF
Protein Properties Length: 442aa    MW: 50340.7 Da    PI: 6.9569
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_29913g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.3e-36471382102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y+++ed+ +++++sws+++nsfvv++++ f++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+ i
  MA_29913g0010  47 FLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKLI 133
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  MA_29913g0010 134 QRRKP 138
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3843136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.8E-6043136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-204770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-2098110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDSQNSGISA GDEVNLGNFN VKEEESMQMP SCPRPMEGLH CAGPPPFLTK TYDMVEDPLT  60
DTVVSWSSTN NSFVVWNSHL FSSDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE  120
GFLRGQKHLL KLIQRRKPSC PPQFLDNLHH HHQQDQQQGM GACVEVGQFG MVGEIEGLRR  180
DKSVLMMEVV KLRQQQQSTR NQLQTIGHRL QSTEQRQQHM MTFLARAIQN PTFLAQLSQN  240
KQASKRLATS KKRRRLPKGE AQVNDVFWEE LLNEHFDSQD DSGTEAEANF PDQDKGNFSS  300
SSRSDVNLLA EQMGLTAFHQ SIPIIPEKLI ALESANVIDF LFGTGWTSDG IHQASQVVGE  360
SASNDIKIPN MIVYIFSHQH QAGHMMVAYR FDSKANQNMC RISRWIQEMT QGCTFIDSTG  420
AVNTMASLQK RYIIRDDIFK SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-253813617129Heat shock factor protein 1
5d5v_B1e-253813617129Heat shock factor protein 1
5d5v_D1e-253813617129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0851290.0EF085129.1 Picea sitchensis clone WS02725_C11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512857.11e-103heat stress transcription factor A-6b
SwissprotQ6F3881e-97HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLA9NUX60.0A9NUX6_PICSI; Uncharacterized protein
STRINGAquca_017_00542.11e-100(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-86heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]