PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_297507g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NF-YB

Protein Properties

Length: 117aa MW: 13161.5 Da PI: 4.2118

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_297507g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	53.4	6.1e-17	1	65	27	91
NF-YB 27 iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +++da++++ ec +efi +++se+++ c re+++ti+++ +l al lGf dy+e++ + +++r MA_297507g0010 1 VARDAQDLLVECCVEFINLISSESNEVCGREEKRTIAPEHVLRALEVLGFGDYIEEVYAAYEQHR 65 689****************************************************9977666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	4.7E-13	1	45	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.6E-29	1	108	IPR009072	Histone-fold
SuperFamily	SSF47113	8.78E-26	1	106	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
VARDAQDLLV ECCVEFINLI SSESNEVCGR EEKRTIAPEH VLRALEVLGF GDYIEEVYAA 60 YEQHRLETLD SPKSGRWASG AEMTEEEALA EQQRMFAEAR ARMNNGNANP PRQSDSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-28	1	100	34	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677004	0.0	EF677004.1 Picea sitchensis clone WS02759_P15 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006841904.1	2e-74	protein Dr1 homolog
Refseq	XP_011622414.1	2e-74	protein Dr1 homolog
Refseq	XP_020521360.1	2e-74	protein Dr1 homolog
Swissprot	P49592	2e-59	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	B8LMI4	8e-81	B8LMI4_PICSI; Uncharacterized protein
STRING	ERN03579	8e-74	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3449	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-63	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]