PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_29238g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 369aa    MW: 41665.6 Da    PI: 7.714
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_29238g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-06205224120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++Cp Cgk+F+r  n++ H+
  MA_29238g0010 205 FSCPVCGKTFNRYNNMQMHM 224
                    89*****************9 PP
2zf-C2H213.60.0002289311123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +C+ksF  + + ++H +++
  MA_29238g0010 289 FMCRKCSKSFAVRGDWRTHEKNC 311
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.42E-6198227No hitNo description
PROSITE profilePS5015710.97205232IPR007087Zinc finger, C2H2
SMARTSM003550.017205227IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-6205224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.7E-4205224IPR007087Zinc finger, C2H2
PROSITE patternPS000280207227IPR007087Zinc finger, C2H2
SMARTSM00355190252284IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.07E-6271309No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4276309IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035555289309IPR015880Zinc finger, C2H2-like
SMARTSM00355160315338IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNMRRYHTDI GSPAPMTARP ISFTEWLKPK PSSGMLTASD LPMAIPCMET LDPRSNLTTY  60
IQPSALYSAH SYAQHALDQC PLQPERCDSP PLREALPLLS LSPPRNPTDH NLERHDRKDD  120
ENHDHDEALN DNVTVALHIG PPSTNSYNYD NNSGAAVSFK ADHQSGTNYS YDHAADKEKL  180
RAGRVPEGQY WIPTSAQILI GPTQFSCPVC GKTFNRYNNM QMHMWGHGSQ YRKGPESLRG  240
TQPTAMLRLP CYCCAQGCKN NIDHPRAKPL KDFRTLQTHY KRKHGMKPFM CRKCSKSFAV  300
RGDWRTHEKN CGKLWFCTCG SDFKHKRSLK DHIRAFGHGH APQGEADNYS FEDEEDQGSE  360
DDELSGGSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385058.11e-130zinc finger protein WIP6-like
RefseqXP_024385059.11e-130zinc finger protein WIP6-like
SwissprotQ9SVY11e-113ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1K4711e-128A0A2K1K471_PHYPA; Uncharacterized protein
STRINGPP1S359_44V6.11e-130(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]