PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_292200g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 167aa MW: 18981.7 Da PI: 7.0528

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_292200g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122	3.2e-38	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+ r+kC+++Cvlapyfp ++++kf vh++FG+ +++kll++l+ e+r da+ss+vyeA+ r rdPv+G+vgvi++l++++ +l+a+l+ MA_292200g0010 6 PCGACKIYRKKCSEKCVLAPYFPLDDRQKFLLVHRVFGRGHIIKLLRDLQAEQRGDAVSSMVYEANQRDRDPVHGCVGVINDLHRRVTELQAKLD 100 7*********************************************************************************************9 PP DUF260 96 llkee 100 + +++ MA_292200g0010 101 SKQAQ 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.245	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-37	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MRSTLPCGAC KIYRKKCSEK CVLAPYFPLD DRQKFLLVHR VFGRGHIIKL LRDLQAEQRG 60 DAVSSMVYEA NQRDRDPVHG CVGVINDLHR RVTELQAKLD SKQAQLADMS MQHAHLLDLA 120 TNLVTNYHEA LVTHIYDASL QVSEGTHTDP HVLDDLDPKQ LWEPLST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-34	6	125	11	130	LOB family transfactor Ramosa2.1
5ly0_B	7e-34	6	125	11	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT114443	0.0	BT114443.1 Picea glauca clone GQ03514_J12 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LQR0	6e-44	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	1e-43	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	B8LQI9	2e-66	B8LQI9_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-46	LOB domain-containing protein 1