PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_290245g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24598.8 Da PI: 7.8732 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.2 | 1.9e-45 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+ +Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA+ar++dPvyG+vg i+ lq+q++ql++el+ MA_290245g0010 8 PCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTELH 102 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e MA_290245g0010 103 HARSE 107 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.456 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MASSSNSPCA ACKFLRRKCT LECVFAPYFP PDQPQKFANV HKIFGASNVT KLLNELHPHQ 60 REDAVNSLAY EADARVKDPV YGCVGAISIL QHQVKQLQTE LHHARSELSK YINAGIAIPP 120 MGVAPGIGMG LAGSSRDQIF RDQNIIESHI SRDHILRASN YDQTDIVRLS GPGYDPNYLA 180 ISGSLAQAQA QAQAQVFNPY PRTGSSSDER ACISPPYLHP KREE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-57 | 4 | 111 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-57 | 4 | 111 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT119542 | 0.0 | BT119542.1 Picea glauca clone GQ04106_O21 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024403438.1 | 3e-70 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A443NSI2 | 2e-73 | A0A443NSI2_9MAGN; LOB domain-containing protein 6-like protein | ||||
STRING | PP1S170_78V6.1 | 1e-69 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-59 | LBD family protein |