PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_28961g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 320aa    MW: 35563.2 Da    PI: 6.7802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_28961g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09132179455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++ Lq
  MA_28961g0020 132 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQALQ 179
                    8*************************9....677****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.82E-10126183No hitNo description
SuperFamilySSF474599.81E-17126196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.669128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-16128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-6132179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MMAQRLDISG GNDSSISELE QTNAHPDLTS KDIINLRKRK CLSNPKVKVA DVPSIPPKTK  60
ETDETERNGK HYKVGESTKD KDDLKDKLEE SNSAETAESC PKQTVDNAKP SSVSVKQDYI  120
HVRARRGQAT DSHSLAERVR REKISERMKL LQDLVPGCNK VTGKAVMLDE IINYVQALQC  180
QVEFLSMKLA AVNPQPDCNV EGGYLARDVL QPHCSSISKM FAPDTTAAAS QINQLQKTPL  240
QHGLQCRADK QELAIRGMMD TQFTCMNGYA DPTFQLQMSQ GWDDEFQNAV DIGLDQNRSN  300
PLKSHGFHGV LPTGHMKVEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0851330.0EF085133.1 Picea sitchensis clone WS02910_H20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9CAA93e-54BH049_ARATH; Transcription factor bHLH49
TrEMBLA9NUY00.0A9NUY0_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]