PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_28894g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

ERF

Protein Properties

Length: 193aa MW: 20971.6 Da PI: 8.5008

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_28894g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.7	4.3e-11	36	63	28	55
AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55 ++r +lg+f+taeeAa+a+++a+++l+g MA_28894g0010 36 KTRLWLGTFDTAEEAARAYDNAARNLRG 63 59************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.144	9	71	IPR001471	AP2/ERF domain
SMART	SM00380	8.6E-13	12	77	IPR001471	AP2/ERF domain
Pfam	PF00847	4.6E-7	34	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-12	34	71	IPR016177	DNA-binding domain
CDD	cd00018	6.22E-17	35	71	No hit	No description
Gene3D	G3DSA:3.30.730.10	6.4E-18	35	71	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAVDTMHMAR IGVKMEIGGG EETASSPVKG THFRGKTRLW LGTFDTAEEA ARAYDNAARN 60 LRGPKAKTNF AFHDDTAALF SNDVTRAVPA QRQEWPPRSA FCSKQEPGVI SNIYAPSPAL 120 PSVAGNDRAS SCVMAVENRA ASAKKQKLLF GIHLFESSRN LQQQEDAVIC SSSRRQPPFL 180 LDLNLPPAAN DVD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM202240	0.0	HM202240.1 Picea sitchensis isolate KD200 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202241	0.0	HM202241.1 Picea sitchensis isolate KD201 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202242	0.0	HM202242.1 Picea sitchensis isolate KD300 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202243	0.0	HM202243.1 Picea sitchensis isolate KD301 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202245	0.0	HM202245.1 Picea sitchensis isolate KD401 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202246	0.0	HM202246.1 Picea sitchensis isolate PR100 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202248	0.0	HM202248.1 Picea sitchensis isolate PR200 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202255	0.0	HM202255.1 Picea sitchensis isolate RW101 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202256	0.0	HM202256.1 Picea sitchensis isolate RW200 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202257	0.0	HM202257.1 Picea sitchensis isolate RW201 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202258	0.0	HM202258.1 Picea sitchensis isolate RW300 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202259	0.0	HM202259.1 Picea sitchensis isolate RW301 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202261	0.0	HM202261.1 Picea sitchensis isolate RW401 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202265	0.0	HM202265.1 Picea sitchensis isolate VA201 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202268	0.0	HM202268.1 Picea sitchensis isolate VA400 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202269	0.0	HM202269.1 Picea sitchensis isolate VA401 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202272	0.0	HM202272.1 Picea sitchensis isolate VD200 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202273	0.0	HM202273.1 Picea sitchensis isolate VD201 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202274	0.0	HM202274.1 Picea sitchensis isolate VD300 ethylene-responsive element binding factor-like protein mRNA, complete cds.
GenBank	HM202276	0.0	HM202276.1 Picea sitchensis isolate VD400 ethylene-responsive element binding factor-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278126.1	7e-21	PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBL	E0ZGZ0	1e-136	E0ZGZ0_PICSI; Ethylene-responsive element binding factor-like protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20310.1	3e-06	ethylene response factor 7