PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_283702g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 408aa    MW: 45170.3 Da    PI: 5.7088
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_283702g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-10226272354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + h ++Er+RR+ + ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  MA_283702g0010 226 QDHIMAERKRREILSQRFIALSALIPGL-----KKMDKASVLDDAIKYVKKL 272
                     5699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-8227272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15227284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-15227283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-12228276No hitNo description
SMARTSM003538.5E-12229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEMLSAQWLS ALGMEDPALL RQYSNLSNPT LEQLAASMDY QHNENFDQGG SFQSFNPMEN  60
LKIPSTACSE FHSGVRFSEG LTGYERPMKI PKANSWDSTS SQLPFSSVYL QNSMQNVQVQ  120
QQHCLSQQLE SYITSIPQVK DDIYETVAPR TPAIQGEIMV SKGSAGQKSC ISNSDINRGL  180
DAFNLSAGEE LISTQNIFMG NHFLDANVST SIMNPPVPAK TSGHSQDHIM AERKRREILS  240
QRFIALSALI PGLKKMDKAS VLDDAIKYVK KLRERLNLLE QQTPKDTVQS VVYVNKSPLS  300
SEDDKTSSIE NSSKASVDDK FGLLTPEIEA RVVGRNVLVR IHCEKKKGLL VKCLSELEKL  360
QLTVANASIL SFSETALDLT LSAQMEEGCG LTVTDIVKNL EAFFKKMS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231236ERKRRE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-48bHLH family protein