PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_2800g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 312aa MW: 34921.9 Da PI: 6.2844 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C k F++ L H++ H MA_2800g0010 55 YACTFCRKEFRSAQALGGHMNIH 77 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.75E-6 | 52 | 81 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 53 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.1E-5 | 55 | 78 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.261 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAVNLTMEEM PWTSGRPNSY QREDDHHGYS WEEQAFAEDA GGVMGGSSTW PPRSYACTFC 60 RKEFRSAQAL GGHMNIHRRD RARLRQGIAI DININPESNF AAFDHNHPRC ELITPEPYYL 120 YPETQPHAGL MYHRNTAFSP DNSIVRLPHN SQPLPSGPIP SQPIATFIPS ISQPASSFSS 180 YPAAPSTLLS MSPFSKTPYI SSTNLFSSDS QTLQAPFDTI SKDCSDSAGS AEANRWNTQT 240 DSLFKDANMA IKAVESHHPE TKEYVNVLDV MKITRCSKSE SLDNMDDLDL ELRLGERPPV 300 EKYRIGKFKR GV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-11 | 50 | 77 | 2 | 29 | superman protein |
2l1o_A | 1e-11 | 50 | 77 | 2 | 29 | Transcriptional regulator SUPERMAN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT101907 | 0.0 | BT101907.1 Picea glauca clone GQ0133_A12 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-23 | zinc-finger protein 10 |