PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2800g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 312aa    MW: 34921.9 Da    PI: 6.2844
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2800g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235577123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y C+ C k F++   L  H++ H
  MA_2800g0010 55 YACTFCRKEFRSAQALGGHMNIH 77
                  89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.75E-65281No hitNo description
Gene3DG3DSA:3.30.160.602.8E-45380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-55578IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2615582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAVNLTMEEM PWTSGRPNSY QREDDHHGYS WEEQAFAEDA GGVMGGSSTW PPRSYACTFC  60
RKEFRSAQAL GGHMNIHRRD RARLRQGIAI DININPESNF AAFDHNHPRC ELITPEPYYL  120
YPETQPHAGL MYHRNTAFSP DNSIVRLPHN SQPLPSGPIP SQPIATFIPS ISQPASSFSS  180
YPAAPSTLLS MSPFSKTPYI SSTNLFSSDS QTLQAPFDTI SKDCSDSAGS AEANRWNTQT  240
DSLFKDANMA IKAVESHHPE TKEYVNVLDV MKITRCSKSE SLDNMDDLDL ELRLGERPPV  300
EKYRIGKFKR GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-115077229superman protein
2l1o_A1e-115077229Transcriptional regulator SUPERMAN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1019070.0BT101907.1 Picea glauca clone GQ0133_A12 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-23zinc-finger protein 10